RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 CSNK2A2P19784 350 aaPredicted RBP10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RAB3AP20336 220 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SOX3P41225 446 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SHC2P98077 582 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RGNQ15493 299 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SYPL1Q16563 259 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ZNF385BQ569K4 471 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PRSS36Q5K4E3 855 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ZNF680Q8NEM1 530 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 OR9A2Q8NGT5 310 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TMEM19Q96HH6 336 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SLC38A2Q96QD8 506 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TMED9Q9BVK6 235 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TCEAL2Q9H3H9 227 aaPredicted RBP10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TBC1D24Q9ULP9 559 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 YARS2Q9Y2Z4 477 aaKnown RBP10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TRBV5-4A0A0C4DH59 114 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TEX13CA0A0J9YWL9 993 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 A0A1W2PPL8 197 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SLC5A10A0PJK1 596 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PRSS38A1L453 326 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ERVH48-1M5A8F1 160 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 EEF1E1O43324 174 aaKnown RBP10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 APOC1P02654 83 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CTRB1P17538 263 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MC3RP41968 323 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CSNK1EP49674 416 aaKnown RBP10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 KCNC4Q03721 635 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 LTB4RQ15722 352 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 EXOC3L2Q2M3D2 409 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 COL28A1Q2UY09 1125 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 YIF1BQ5BJH7 314 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CTRB2Q6GPI1 263 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 LIN54Q6MZP7 749 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CNIH2Q6PI25 160 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 NRSN1Q8IZ57 195 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 IQCF1Q8N6M8 205 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 IL17RCQ8NAC3 791 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 YIPF6Q96EC8 236 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ELMOD3Q96FG2 381 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 C16orf58Q96GQ5 468 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TMEM80Q96HE8 168 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RHNO1Q9BSD3 238 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CACNG6Q9BXT2 260 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 DUSP21Q9H596 190 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PNO1Q9NRX1 252 aaKnown RBP10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 KCMF1Q9P0J7 381 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 STUB1Q9UNE7 303 aa10.11□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RAB19A4D1S5 217 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SLC16A6O15403 523 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PPIBP23284 216 aaKnown RBP10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MPIP34949 423 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RPL3P39023 403 aaKnown RBP10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 STXBP1P61764 594 aaKnown RBP10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SRSF5Q13243 272 aaKnown RBP10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 FGL2Q14314 439 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 C1orf189Q5VU69 101 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PTRH1Q86Y79 214 aaKnown RBP10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 COX18Q8N8Q8 333 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 AMER3Q8N944 861 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 OR13H1Q8NG92 308 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 OR51I1Q9H343 314 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MAGIXQ9H6Y5 334 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RLIMQ9NVW2 624 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RPS6KB2Q9UBS0 482 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 CORO2BQ9UQ03 480 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TRPM7Q96QT4 1865 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PROM1O43490 865 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SULT1B1O43704 296 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PTHP01270 115 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ZNF888P0CJ79 500 aaPredicted RBP10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 NDUFV2P19404 249 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ADPRHP54922 357 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 HHEXQ03014 270 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MLIPQ5VWP3 458 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PYHIN1Q6K0P9 492 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ZNF655Q8N720 491 aaPredicted RBP10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 FKBP10Q96AY3 582 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 LYSMD1Q96S90 227 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 POLR2J3Q9H1A7 115 aaKnown RBP10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 OR51V1Q9H2C8 321 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ACOXLQ9NUZ1 547 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 RBFOX1Q9NWB1 397 aaKnown RBP10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TMEM5Q9Y2B1 443 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 COL4A6Q14031 1691 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 METTL21EPA6NDL7 271 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 FAM170BA6NMN3 283 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 GFYI3L273 518 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PDCD5O14737 125 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 SLC16A5O15375 505 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 B3GALT2O43825 422 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 TNFP01375 233 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ZNF250P15622 560 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 APEX1P27695 318 aaKnown RBP10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 PIK3CBP42338 1070 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 ANXA11P50995 505 aaKnown RBP10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 GPR85P60893 370 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 MTAPQ13126 283 aa10.1□□□□□ -0.79
MSH5-SAPCD1-207ENST00000493662 FCN2Q15485 313 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms