RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 SLC16A11Q8NCK7 471 aa20.79■□□□□ 0.92
COL9A3-213ENST00000489045 OR7A2PQ8NGA2 310 aa20.79■□□□□ 0.92
COL9A3-213ENST00000489045 OR5M1Q8NGP8 315 aa20.79■□□□□ 0.92
COL9A3-213ENST00000489045 C1orf50Q9BV19 199 aa20.79■□□□□ 0.92
COL9A3-213ENST00000489045 ACBD3Q9H3P7 528 aa20.79■□□□□ 0.92
COL9A3-213ENST00000489045 RASSF1Q9NS23 344 aa20.79■□□□□ 0.92
COL9A3-213ENST00000489045 OR2M5A3KFT3 312 aa20.78■□□□□ 0.92
COL9A3-213ENST00000489045 TUBAL3A6NHL2 446 aa20.78■□□□□ 0.92
COL9A3-213ENST00000489045 A6NNC1 897 aa20.78■□□□□ 0.92
COL9A3-213ENST00000489045 GMFGO60234 142 aa20.78■□□□□ 0.92
COL9A3-213ENST00000489045 TGM6O95932 706 aa20.78■□□□□ 0.92
COL9A3-213ENST00000489045 DDX5P17844 614 aaKnown RBP20.78■□□□□ 0.92
COL9A3-213ENST00000489045 DNAJA1P31689 397 aaKnown RBP20.78■□□□□ 0.92
COL9A3-213ENST00000489045 ETV4P43268 484 aa20.78■□□□□ 0.92
COL9A3-213ENST00000489045 SORDQ00796 357 aa20.78■□□□□ 0.92
COL9A3-213ENST00000489045 C17orf67Q0P5P2 114 aa20.78■□□□□ 0.92
COL9A3-213ENST00000489045 PTGR1Q14914 329 aa20.78■□□□□ 0.92
COL9A3-213ENST00000489045 DUSP5Q16690 384 aa20.78■□□□□ 0.92
COL9A3-213ENST00000489045 C6orf136Q5SQH8 315 aa20.78■□□□□ 0.92
COL9A3-213ENST00000489045 CHMP1BQ7LBR1 199 aa20.78■□□□□ 0.92
COL9A3-213ENST00000489045 LUZP2Q86TE4 346 aa20.78■□□□□ 0.92
COL9A3-213ENST00000489045 MREGQ8N565 214 aa20.78■□□□□ 0.92
COL9A3-213ENST00000489045 MEIOBQ8N635 442 aa20.78■□□□□ 0.92
COL9A3-213ENST00000489045 OR6Y1Q8NGX8 325 aa20.78■□□□□ 0.92
COL9A3-213ENST00000489045 FAM120BQ96EK7 910 aaKnown RBP20.78■□□□□ 0.92
COL9A3-213ENST00000489045 OTUB1Q96FW1 271 aaPredicted RBP20.78■□□□□ 0.92
COL9A3-213ENST00000489045 YIPF4Q9BSR8 244 aa20.78■□□□□ 0.92
COL9A3-213ENST00000489045 RBM24Q9BX46 236 aaKnown RBP20.78■□□□□ 0.92
COL9A3-213ENST00000489045 CLEC4MQ9H2X3 399 aaPredicted RBP20.78■□□□□ 0.92
COL9A3-213ENST00000489045 SIRT3Q9NTG7 399 aaPredicted RBP20.78■□□□□ 0.92
COL9A3-213ENST00000489045 ZNF337Q9Y3M9 751 aa20.78■□□□□ 0.92
COL9A3-213ENST00000489045 NUP214P35658 2090 aaPredicted RBP20.77■□□□□ 0.92
COL9A3-213ENST00000489045 IGLV3-32A0A0A0MS00 114 aa20.77■□□□□ 0.92
COL9A3-213ENST00000489045 FAM221AA4D161 298 aa20.77■□□□□ 0.92
COL9A3-213ENST00000489045 H3BML4 177 aa20.77■□□□□ 0.92
COL9A3-213ENST00000489045 SEC14L5O43304 696 aa20.77■□□□□ 0.92
COL9A3-213ENST00000489045 RPL3P39023 403 aaKnown RBP20.77■□□□□ 0.92
COL9A3-213ENST00000489045 MLC1Q15049 377 aa20.77■□□□□ 0.92
COL9A3-213ENST00000489045 KRT71Q3SY84 523 aa20.77■□□□□ 0.92
COL9A3-213ENST00000489045 FIGNL1Q6PIW4 674 aa20.77■□□□□ 0.92
COL9A3-213ENST00000489045 P4HA3Q7Z4N8 544 aa20.77■□□□□ 0.92
COL9A3-213ENST00000489045 ZAR1Q86SH2 424 aa20.77■□□□□ 0.92
COL9A3-213ENST00000489045 JADE3Q92613 823 aa20.77■□□□□ 0.92
COL9A3-213ENST00000489045 C16orf58Q96GQ5 468 aa20.77■□□□□ 0.92
COL9A3-213ENST00000489045 PKNOX2Q96KN3 472 aa20.77■□□□□ 0.92
COL9A3-213ENST00000489045 PIGQQ9BRB3 760 aa20.77■□□□□ 0.92
COL9A3-213ENST00000489045 ZCCHC3Q9NUD5 404 aaKnown RBP20.77■□□□□ 0.92
COL9A3-213ENST00000489045 MED13LQ71F56 2210 aa20.77■□□□□ 0.91
COL9A3-213ENST00000489045 A0A1W2PRB8 838 aa20.76■□□□□ 0.91
COL9A3-213ENST00000489045 H0YC42 278 aa20.76■□□□□ 0.91
COL9A3-213ENST00000489045 KCNK2O95069 426 aa20.76■□□□□ 0.91
COL9A3-213ENST00000489045 OXSR1O95747 527 aaPredicted RBP20.76■□□□□ 0.91
COL9A3-213ENST00000489045 ALOX5P09917 674 aa20.76■□□□□ 0.91
COL9A3-213ENST00000489045 LAMP1P11279 417 aa20.76■□□□□ 0.91
COL9A3-213ENST00000489045 CPA2P48052 419 aa20.76■□□□□ 0.91
COL9A3-213ENST00000489045 TPD52P55327 224 aaPredicted RBP20.76■□□□□ 0.91
COL9A3-213ENST00000489045 CLDN15P56746 228 aa20.76■□□□□ 0.91
COL9A3-213ENST00000489045 ZNF844Q08AG5 666 aa20.76■□□□□ 0.91
COL9A3-213ENST00000489045 CPEB4Q17RY0 729 aaKnown RBP eCLIP20.76■□□□□ 0.91
COL9A3-213ENST00000489045 ZCCHC12Q6PEW1 402 aa20.76■□□□□ 0.91
COL9A3-213ENST00000489045 SPNS3Q6ZMD2 512 aa20.76■□□□□ 0.91
COL9A3-213ENST00000489045 NUDCD3Q8IVD9 361 aa20.76■□□□□ 0.91
COL9A3-213ENST00000489045 COX18Q8N8Q8 333 aa20.76■□□□□ 0.91
COL9A3-213ENST00000489045 FNDC5Q8NAU1 212 aa20.76■□□□□ 0.91
COL9A3-213ENST00000489045 OR4C3Q8NH37 302 aa20.76■□□□□ 0.91
COL9A3-213ENST00000489045 GOT1L1Q8NHS2 421 aaPredicted RBP20.76■□□□□ 0.91
COL9A3-213ENST00000489045 LINC01560Q8TB33 94 aa20.76■□□□□ 0.91
COL9A3-213ENST00000489045 FAM110BQ8TC76 370 aa20.76■□□□□ 0.91
COL9A3-213ENST00000489045 PIGMQ9H3S5 423 aa20.76■□□□□ 0.91
COL9A3-213ENST00000489045 GALNT8Q9NY28 637 aa20.76■□□□□ 0.91
COL9A3-213ENST00000489045 TNFSF12-TNFSF13A0A0A6YY99 330 aa20.75■□□□□ 0.91
COL9A3-213ENST00000489045 A0A1W2PNV4 684 aa20.75■□□□□ 0.91
COL9A3-213ENST00000489045 SLC22A20A6NK97 555 aa20.75■□□□□ 0.91
COL9A3-213ENST00000489045 ALG1L2C9J202 215 aa20.75■□□□□ 0.91
COL9A3-213ENST00000489045 LINC01387J3KSC0 135 aa20.75■□□□□ 0.91
COL9A3-213ENST00000489045 LYPLA1O75608 230 aaPredicted RBP20.75■□□□□ 0.91
COL9A3-213ENST00000489045 TNFSF13O75888 250 aa20.75■□□□□ 0.91
COL9A3-213ENST00000489045 NGFRP08138 427 aa20.75■□□□□ 0.91
COL9A3-213ENST00000489045 SERPINB4P48594 390 aa20.75■□□□□ 0.91
COL9A3-213ENST00000489045 PRIM2P49643 509 aa20.75■□□□□ 0.91
COL9A3-213ENST00000489045 SUCLG1P53597 346 aaKnown RBP20.75■□□□□ 0.91
COL9A3-213ENST00000489045 CLDN20P56880 219 aa20.75■□□□□ 0.91
COL9A3-213ENST00000489045 DAZAP2Q15038 168 aaPredicted RBP20.75■□□□□ 0.91
COL9A3-213ENST00000489045 GLYR1Q49A26 553 aaPredicted RBP20.75■□□□□ 0.91
COL9A3-213ENST00000489045 EXOSC6Q5RKV6 272 aaKnown RBP20.75■□□□□ 0.91
COL9A3-213ENST00000489045 IL23RQ5VWK5 629 aa20.75■□□□□ 0.91
COL9A3-213ENST00000489045 GATSQ8NAP1 163 aa20.75■□□□□ 0.91
COL9A3-213ENST00000489045 PPP1R14CQ8TAE6 165 aa20.75■□□□□ 0.91
COL9A3-213ENST00000489045 NUDT8Q8WV74 236 aa20.75■□□□□ 0.91
COL9A3-213ENST00000489045 SMPDL3BQ92485 455 aa20.75■□□□□ 0.91
COL9A3-213ENST00000489045 TUBGCP3Q96CW5 907 aa20.75■□□□□ 0.91
COL9A3-213ENST00000489045 LIME1Q9H400 295 aa20.75■□□□□ 0.91
COL9A3-213ENST00000489045 FBXO34Q9NWN3 711 aa20.75■□□□□ 0.91
COL9A3-213ENST00000489045 PACSIN3Q9UKS6 424 aa20.75■□□□□ 0.91
COL9A3-213ENST00000489045 VDAC3Q9Y277 283 aa20.75■□□□□ 0.91
COL9A3-213ENST00000489045 SNX8Q9Y5X2 465 aa20.75■□□□□ 0.91
COL9A3-213ENST00000489045 SHISA8B8ZZ34 492 aa20.74■□□□□ 0.91
COL9A3-213ENST00000489045 CTIFO43310 598 aaKnown RBP20.74■□□□□ 0.91
COL9A3-213ENST00000489045 NDUFB5O43674 189 aa20.74■□□□□ 0.91
COL9A3-213ENST00000489045 HSPA4LO95757 839 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms