RNA–Protein interactions for RNA: ENST00000485792.1

CUX1-208, Transcript of cut like homeobox 1, human

TSL 5

Gene CUX1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CUX1-208	ENST00000485792	VASN	Q6EMK4	673 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	RTL6	Q6ICC9	239 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	SLC30A6	Q6NXT4	461 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	ARHGAP11A	Q6P4F7	1023 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	POMZP3	Q6PJE2	187 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	GFRAL	Q6UXV0	394 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	C3P1	Q6ZMU1	363 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	HDX	Q7Z353	690 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	R3HCC1L	Q7Z5L2	792 aa	Known RBP	5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	GALNT10	Q86SR1	603 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	SLC22A16	Q86VW1	577 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	WDR75	Q8IWA0	830 aa	Known RBP	5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	CLECL1	Q8IZS7	167 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	LIX1	Q8N485	282 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	FAM109A	Q8N4B1	249 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	FADS6	Q8N9I5	356 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	OR7A2P	Q8NGA2	310 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	CEP70	Q8NHQ1	597 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	FBXO30	Q8TB52	745 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	FAM57A	Q8TBR7	257 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	PIWIL2	Q8TC59	973 aa	Known RBP	5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	SSC4D	Q8WTU2	575 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	ITLN2	Q8WWU7	325 aa	Predicted RBP	5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	OR5P2	Q8WZ92	322 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	TMBIM1	Q969X1	311 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	OMA1	Q96E52	524 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	FAM120B	Q96EK7	910 aa	Known RBP	5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	ZBED6CL	Q96FA7	236 aa	Predicted RBP	5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	MARK4	Q96L34	752 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	GAL3ST4	Q96RP7	486 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	STAC	Q99469	402 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	VKORC1	Q9BQB6	163 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	MANSC1	Q9H8J5	431 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	GALNT9	Q9HCQ5	603 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	KCNK9	Q9NPC2	374 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	MIEF1	Q9NQG6	463 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	PFDN4	Q9NQP4	134 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	TPSG1	Q9NRR2	321 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	DUSP22	Q9NRW4	184 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	GIMAP4	Q9NUV9	329 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	GPATCH2	Q9NW75	528 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	NPIPA1	Q9UND3	350 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	MAPRE3	Q9UPY8	281 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	ENTPD4	Q9Y227	616 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	OSGIN2	Q9Y236	505 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	MEMO1	Q9Y316	297 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	FAM215A	Q9Y5M1	114 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	GMEB1	Q9Y692	573 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	POLQ	O75417	2590 aa		5.21	□□□□□ -1.58
CUX1-208	ENST00000485792	ROS1	P08922	2347 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	MED13L	Q71F56	2210 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	DSCAM	O60469	2012 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	OTOG	Q6ZRI0	2925 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792		A0A1B0GTH9	108 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	PRSS51	A0A1B0GVH4	220 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	HMGB1P1	B2RPK0	211 aa	Predicted RBP	5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	ETV2	O00321	342 aa	Predicted RBP	5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	PDPK1	O15530	556 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	EMC8	O43402	210 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	AKAP10	O43572	662 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	ZIC3	O60481	467 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	COQ9	O75208	318 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	CRCP	O75575	148 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	TGDS	O95455	350 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792		P04436	131 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	HMGN2	P05204	90 aa	Known RBP	5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	HOXD4	P09016	255 aa	Predicted RBP	5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	GP1BB	P13224	206 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	PRF1	P14222	555 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	LBP	P18428	481 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	ELAVL4	P26378	380 aa	Known RBP	5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	NTS	P30990	170 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	CDKN2C	P42773	168 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	MAGEA5	P43359	124 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	MVD	P53602	400 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	MANF	P55145	182 aa	Known RBP	5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	CLDN15	P56746	228 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	B3GALT5-AS1	P59052	145 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	PRR5	P85299	388 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	TFF3	Q07654	80 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	CRYZ	Q08257	329 aa	Known RBP	5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	ART3	Q13508	389 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	EFR3A	Q14156	821 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	SLC10A1	Q14973	349 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	DPY19L1	Q2PZI1	675 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	GTDC1	Q4AE62	458 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	SLC9B1	Q4ZJI4	515 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	HHAT	Q5VTY9	493 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	HLA-DQA1	Q5Y7H0	255 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	ATG16L1	Q676U5	607 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	HEPHL1	Q6MZM0	1159 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	MFSD12	Q6NUT3	480 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	FDX2	Q6P4F2	183 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	EPGN	Q6UW88	154 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	TMEM107	Q6UX40	140 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	FAM47E	Q6ZV65	393 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	SPATA19	Q7Z5L4	167 aa		5.2	□□□□□ -1.58
CUX1-208	ENST00000485792	TRIM42	Q8IWZ5	723 aa		5.2	□□□□□ -1.58

Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms