RNA–Protein interactions for RNA: ENST00000480744.2

LIMS3-203, Transcript of LIM zinc finger domain containing 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene LIMS3, Length 1,197 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-203ENST00000480744 CLDN20P56880 219 aa13.74□□□□□ -0.21
LIMS3-203ENST00000480744 RPS3AP61247 264 aaKnown RBP13.74□□□□□ -0.21
LIMS3-203ENST00000480744 RPL38P63173 70 aaKnown RBP13.74□□□□□ -0.21
LIMS3-203ENST00000480744 C17orf67Q0P5P2 114 aa13.74□□□□□ -0.21
LIMS3-203ENST00000480744 KIAA0040Q15053 153 aa13.74□□□□□ -0.21
LIMS3-203ENST00000480744 PON3Q15166 354 aa13.74□□□□□ -0.21
LIMS3-203ENST00000480744 SGCBQ16585 318 aa13.74□□□□□ -0.21
LIMS3-203ENST00000480744 BTLAQ7Z6A9 289 aa13.74□□□□□ -0.21
LIMS3-203ENST00000480744 EXOC3L1Q86VI1 746 aa13.74□□□□□ -0.21
LIMS3-203ENST00000480744 C10orf107Q8IVU9 208 aa13.74□□□□□ -0.21
LIMS3-203ENST00000480744 ZFP28Q8NHY6 868 aa13.74□□□□□ -0.21
LIMS3-203ENST00000480744 FNDC9Q8TBE3 224 aa13.74□□□□□ -0.21
LIMS3-203ENST00000480744 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.74□□□□□ -0.21
LIMS3-203ENST00000480744 SLC9A6Q92581 669 aa13.74□□□□□ -0.21
LIMS3-203ENST00000480744 ZNF845Q96IR2 970 aaPredicted RBP13.74□□□□□ -0.21
LIMS3-203ENST00000480744 CCT7Q99832 543 aa13.74□□□□□ -0.21
LIMS3-203ENST00000480744 PARD6BQ9BYG5 372 aa13.74□□□□□ -0.21
LIMS3-203ENST00000480744 NEUROD4Q9HD90 331 aa13.74□□□□□ -0.21
LIMS3-203ENST00000480744 C6orf203Q9P0P8 240 aaPredicted RBP13.74□□□□□ -0.21
LIMS3-203ENST00000480744 SH3BP4Q9P0V3 963 aa13.74□□□□□ -0.21
LIMS3-203ENST00000480744 MID2Q9UJV3 735 aa13.74□□□□□ -0.21
LIMS3-203ENST00000480744 VDAC3Q9Y277 283 aa13.74□□□□□ -0.21
LIMS3-203ENST00000480744 UQCRHLA0A096LP55 91 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 A0A1W2PPR1 153 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 TTC36A6NLP5 189 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 LINC01387J3KSC0 135 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 TNFRSF21O75509 655 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 CHEK2O96017 543 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 LINC00032P0C843 101 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 NEFHP12036 1026 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 POU2F1P14859 743 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 SDC1P18827 310 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 EFNA1P20827 205 aaPredicted RBP13.73□□□□□ -0.21
LIMS3-203ENST00000480744 PRPH2P23942 346 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 KIR2DL2P43627 348 aaPredicted RBP13.73□□□□□ -0.21
LIMS3-203ENST00000480744 MANFP55145 182 aaKnown RBP13.73□□□□□ -0.21
LIMS3-203ENST00000480744 GALNTL6Q49A17 601 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 VPS26BQ4G0F5 336 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 ZNF385BQ569K4 471 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 APOOLQ6UXV4 268 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 TDRPQ86YL5 185 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 GATSQ8NAP1 163 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 WFDC11Q8NEX6 87 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 NUP43Q8NFH3 380 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 OR2T11Q8NH01 316 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 OR2W6PQ8NHA6 318 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 POM121Q96HA1 1249 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 METTL2AQ96IZ6 378 aaKnown RBP13.73□□□□□ -0.21
LIMS3-203ENST00000480744 WFIKKN1Q96NZ8 548 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 SLC39A3Q9BRY0 314 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 MED18Q9BUE0 208 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 GATA5Q9BWX5 397 aaPredicted RBP13.73□□□□□ -0.21
LIMS3-203ENST00000480744 IQCGQ9H095 443 aaKnown RBP13.73□□□□□ -0.21
LIMS3-203ENST00000480744 GSX1Q9H4S2 264 aaPredicted RBP13.73□□□□□ -0.21
LIMS3-203ENST00000480744 REEP4Q9H6H4 257 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 PPCSQ9HAB8 311 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 BAIAP2L1Q9UHR4 511 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 ZNF175Q9Y473 711 aa13.73□□□□□ -0.21
LIMS3-203ENST00000480744 NUP214P35658 2090 aaPredicted RBP13.72□□□□□ -0.21
LIMS3-203ENST00000480744 EIF1AYO14602 144 aaKnown RBP13.72□□□□□ -0.21
LIMS3-203ENST00000480744 IFI6P09912 130 aa13.72□□□□□ -0.21
LIMS3-203ENST00000480744 ACP2P11117 423 aa13.72□□□□□ -0.21
LIMS3-203ENST00000480744 CD53P19397 219 aa13.72□□□□□ -0.21
LIMS3-203ENST00000480744 PRR5P85299 388 aa13.72□□□□□ -0.21
LIMS3-203ENST00000480744 PCLAFQ15004 111 aa13.72□□□□□ -0.21
LIMS3-203ENST00000480744 GLYR1Q49A26 553 aaPredicted RBP13.72□□□□□ -0.21
LIMS3-203ENST00000480744 FIGNL1Q6PIW4 674 aa13.72□□□□□ -0.21
LIMS3-203ENST00000480744 ZNF474Q6S9Z5 364 aaPredicted RBP13.72□□□□□ -0.21
LIMS3-203ENST00000480744 Q6ZSR9 355 aa13.72□□□□□ -0.21
LIMS3-203ENST00000480744 DDIASQ8IXT1 998 aa13.72□□□□□ -0.21
LIMS3-203ENST00000480744 CDRT4Q8N9R6 151 aa13.72□□□□□ -0.21
LIMS3-203ENST00000480744 CEP70Q8NHQ1 597 aa13.72□□□□□ -0.21
LIMS3-203ENST00000480744 ZBED6CLQ96FA7 236 aaPredicted RBP13.72□□□□□ -0.21
LIMS3-203ENST00000480744 PIK3IP1Q96FE7 263 aa13.72□□□□□ -0.21
LIMS3-203ENST00000480744 OTUB1Q96FW1 271 aaPredicted RBP13.72□□□□□ -0.21
LIMS3-203ENST00000480744 CHMP6Q96FZ7 201 aa13.72□□□□□ -0.21
LIMS3-203ENST00000480744 ZC3HAV1LQ96H79 300 aaKnown RBP13.72□□□□□ -0.21
LIMS3-203ENST00000480744 MS4A4EQ96PG1 132 aa13.72□□□□□ -0.21
LIMS3-203ENST00000480744 PRRG4Q9BZD6 226 aa13.72□□□□□ -0.21
LIMS3-203ENST00000480744 RNF122Q9H9V4 155 aa13.72□□□□□ -0.21
LIMS3-203ENST00000480744 ZNF226Q9NYT6 803 aa13.72□□□□□ -0.21
LIMS3-203ENST00000480744 RAB21Q9UL25 225 aa13.72□□□□□ -0.21
LIMS3-203ENST00000480744 PROCRQ9UNN8 238 aa13.72□□□□□ -0.21
LIMS3-203ENST00000480744 AP4B1Q9Y6B7 739 aa13.72□□□□□ -0.21
LIMS3-203ENST00000480744 NAV3Q8IVL0 2385 aa13.71□□□□□ -0.21
LIMS3-203ENST00000480744 TLDC2A0PJX2 215 aa13.71□□□□□ -0.21
LIMS3-203ENST00000480744 TMEM233B4DJY2 109 aa13.71□□□□□ -0.21
LIMS3-203ENST00000480744 NPIPB8E9PQR5 432 aa13.71□□□□□ -0.21
LIMS3-203ENST00000480744 CTIFO43310 598 aaKnown RBP13.71□□□□□ -0.21
LIMS3-203ENST00000480744 EMC8O43402 210 aa13.71□□□□□ -0.21
LIMS3-203ENST00000480744 NDUFB5O43674 189 aa13.71□□□□□ -0.21
LIMS3-203ENST00000480744 TRIM13O60858 407 aa13.71□□□□□ -0.21
LIMS3-203ENST00000480744 NKX2-2O95096 273 aa13.71□□□□□ -0.21
LIMS3-203ENST00000480744 OXSR1O95747 527 aaPredicted RBP13.71□□□□□ -0.21
LIMS3-203ENST00000480744 FCGR2AP12318 317 aa13.71□□□□□ -0.21
LIMS3-203ENST00000480744 EIF1AXP47813 144 aaKnown RBP13.71□□□□□ -0.21
LIMS3-203ENST00000480744 FGFBP1Q14512 234 aa13.71□□□□□ -0.21
LIMS3-203ENST00000480744 EXOC3L2Q2M3D2 409 aa13.71□□□□□ -0.21
LIMS3-203ENST00000480744 RFTN2Q52LD8 501 aaPredicted RBP13.71□□□□□ -0.21
LIMS3-203ENST00000480744 KANK2Q63ZY3 851 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms