RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 ZNF615Q8N8J6 731 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 ANKFN1Q8N957 763 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 CDRT4Q8N9R6 151 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 SLC16A11Q8NCK7 471 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 HIPK4Q8NE63 616 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 OR52E4Q8NGH9 312 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 C16orf52Q8NHV5 167 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 NFKBIDQ8NI38 313 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 SLC2A12Q8TD20 617 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 ZNF721Q8TF20 911 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 FIG4Q92562 907 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 DAZLQ92904 295 aaKnown RBP6.16□□□□□ -1.42
USP48-208ENST00000479177 RAB8BQ92930 207 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 NCLNQ969V3 563 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 TMEM19Q96HH6 336 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 SENP5Q96HI0 755 aaPredicted RBP6.16□□□□□ -1.42
USP48-208ENST00000479177 RSRC1Q96IZ7 334 aaKnown RBP6.16□□□□□ -1.42
USP48-208ENST00000479177 ART5Q96L15 291 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 NSMCE2Q96MF7 247 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 VSTM2LQ96N03 204 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 WDR77Q9BQA1 342 aaPredicted RBP6.16□□□□□ -1.42
USP48-208ENST00000479177 YIPF4Q9BSR8 244 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 LMF2Q9BU23 707 aaKnown RBP6.16□□□□□ -1.42
USP48-208ENST00000479177 GORASP2Q9H8Y8 452 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 ASCL3Q9NQ33 180 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 DUSP22Q9NRW4 184 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 THUMPD1Q9NXG2 353 aaKnown RBP6.16□□□□□ -1.42
USP48-208ENST00000479177 FBLN5Q9UBX5 448 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 C19orf25Q9UFG5 118 aaPredicted RBP6.16□□□□□ -1.42
USP48-208ENST00000479177 PADI1Q9ULC6 663 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 PPIEQ9UNP9 301 aaKnown RBP6.16□□□□□ -1.42
USP48-208ENST00000479177 ANGPT4Q9Y264 503 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 DTX4Q9Y2E6 619 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 PADI2Q9Y2J8 665 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 PTRH2Q9Y3E5 179 aaKnown RBP6.16□□□□□ -1.42
USP48-208ENST00000479177 HEMK1Q9Y5R4 338 aaPredicted RBP6.16□□□□□ -1.42
USP48-208ENST00000479177 KCNE3Q9Y6H6 103 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 CNTRLQ7Z7A1 2325 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 NINQ8N4C6 2090 aa6.16□□□□□ -1.42
USP48-208ENST00000479177 EXPH5Q8NEV8 1989 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 CACNA1GO43497 2377 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 IGHV3-20A0A0C4DH32 117 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 A0A1W2PQ72 361 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 TTC36A6NLP5 189 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 C21orf140B9A014 251 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 H3BNX3 289 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 STMND1H3BQB6 276 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 PCDH17O14917 1159 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 SLC28A2O43868 658 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 GCM2O75603 506 aaPredicted RBP6.15□□□□□ -1.42
USP48-208ENST00000479177 CREG1O75629 220 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 KRT36O76013 467 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 NKX2-2O95096 273 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 STAMBPO95630 424 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 AGR2O95994 175 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 AK1P00568 194 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 CHRM4P08173 479 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 CD63P08962 238 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 ALOX5P09917 674 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 TFPTP0C1Z6 253 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 TNNI3P19429 210 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 ENDOUP21128 410 aaKnown RBP6.15□□□□□ -1.42
USP48-208ENST00000479177 RBMS1P29558 406 aaKnown RBP6.15□□□□□ -1.42
USP48-208ENST00000479177 GPR143P51810 404 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 MRPS22P82650 360 aaKnown RBP6.15□□□□□ -1.42
USP48-208ENST00000479177 RIPK1Q13546 671 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 DNASE1L3Q13609 305 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 MYBPC3Q14896 1274 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 PCOLCEQ15113 449 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 EBPQ15125 230 aaKnown RBP6.15□□□□□ -1.42
USP48-208ENST00000479177 SYPL1Q16563 259 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 LRRC23Q53EV4 343 aaPredicted RBP6.15□□□□□ -1.42
USP48-208ENST00000479177 ATAD3BQ5T9A4 648 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 INTS11Q5TA45 600 aaKnown RBP6.15□□□□□ -1.42
USP48-208ENST00000479177 PRAMEF8Q5VWM4 474 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 PRAMEF7Q5VXH5 474 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 HLA-DQA1Q5Y7H0 255 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 GTF2IRD2BQ6EKJ0 949 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 GLYATQ6IB77 296 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 REEP3Q6NUK4 255 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 PAPD4Q6PIY7 484 aaKnown RBP6.15□□□□□ -1.42
USP48-208ENST00000479177 NPSR1Q6W5P4 371 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 CCDC80Q76M96 950 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 CPEB2Q7Z5Q1 589 aaKnown RBP6.15□□□□□ -1.42
USP48-208ENST00000479177 GALNT10Q86SR1 603 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 GTF2IRD2Q86UP8 949 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 SPATA24Q86W54 205 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 ZNF227Q86WZ6 799 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 C9orf40Q8IXQ3 194 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 NLGN4XQ8N0W4 816 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 EID3Q8N140 333 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 METTL25Q8N6Q8 603 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 FAM86B1Q8N7N1 296 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 COX18Q8N8Q8 333 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 MORN4Q8NDC4 146 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 CHDHQ8NE62 594 aaPredicted RBP6.15□□□□□ -1.42
USP48-208ENST00000479177 NFAM1Q8NET5 270 aaPredicted RBP6.15□□□□□ -1.42
USP48-208ENST00000479177 NLGN4YQ8NFZ3 816 aaPredicted RBP6.15□□□□□ -1.42
USP48-208ENST00000479177 BBS10Q8TAM1 723 aa6.15□□□□□ -1.42
USP48-208ENST00000479177 ADAMTS15Q8TE58 950 aa6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms