RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 RFWD3Q6PCD5 774 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 ZYG11AQ6WRX3 759 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 SYT10Q6XYQ8 523 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 Q6ZPB1 254 aaPredicted RBP4.16□□□□□ -1.74
UPF3B-203ENST00000478840 EFL1Q7Z2Z2 1120 aaKnown RBP4.16□□□□□ -1.74
UPF3B-203ENST00000478840 VSTM4Q8IW00 320 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 SUMF1Q8NBK3 374 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 ZNF248Q8NDW4 579 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 SH3YL1Q96HL8 342 aaPredicted RBP4.16□□□□□ -1.74
UPF3B-203ENST00000478840 TMEM43Q9BTV4 400 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 CAPS2Q9BXY5 557 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 CRNKL1Q9BZJ0 848 aaKnown RBP4.16□□□□□ -1.74
UPF3B-203ENST00000478840 UFSP2Q9NUQ7 469 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 SMOXQ9NWM0 555 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 NUDT4Q9NZJ9 180 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 CRLS1Q9UJA2 301 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 NPIPA1Q9UND3 350 aa4.16□□□□□ -1.74
UPF3B-203ENST00000478840 IGHV3OR16-10A0A075B7F0 116 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 METTL21EPA6NDL7 271 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 H0Y8G0 127 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 OR7A17O14581 309 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 PRRG1O14668 218 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 B4GALT2O60909 372 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 LAP3P28838 519 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 CAPGP40121 348 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 BDH1Q02338 343 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 PLOD1Q02809 727 aaPredicted RBP4.15□□□□□ -1.75
UPF3B-203ENST00000478840 ACY1Q03154 408 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 RIPPLY1Q0D2K3 151 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 GANABQ14697 944 aaKnown RBP4.15□□□□□ -1.75
UPF3B-203ENST00000478840 GGTA1PQ4G0N0 100 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 C14orf28Q4W4Y0 310 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 C2CD6Q53TS8 623 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 C9orf66Q5T8R8 295 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 SLX4IPQ5VYV7 408 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 EMBQ6PCB8 327 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 CATSPER3Q86XQ3 398 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 LRRC49Q8IUZ0 686 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 C4orf32Q8N8J7 132 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 ZSCAN4Q8NAM6 433 aaPredicted RBP4.15□□□□□ -1.75
UPF3B-203ENST00000478840 RNF139Q8WU17 664 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 RAB3CQ96E17 227 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 C9orf85Q96MD7 179 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 CHCHD5Q9BSY4 110 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 SYT11Q9BT88 431 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 MCRIP2Q9BUT9 160 aaKnown RBP4.15□□□□□ -1.75
UPF3B-203ENST00000478840 DUSP16Q9BY84 665 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 GCOM2Q9BZD3 368 aaPredicted RBP4.15□□□□□ -1.75
UPF3B-203ENST00000478840 JPT2Q9H910 190 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 MEPEQ9NQ76 525 aaPredicted RBP4.15□□□□□ -1.75
UPF3B-203ENST00000478840 NMRK1Q9NWW6 199 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 HYPKQ9NX55 129 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 PTBP2Q9UKA9 531 aaKnown RBP4.15□□□□□ -1.75
UPF3B-203ENST00000478840 NAALAD2Q9Y3Q0 740 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 FER1L5A0AVI2 2057 aa4.15□□□□□ -1.75
UPF3B-203ENST00000478840 PNPLA6Q8IY17 1366 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 ZNF208O43345 1280 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 LCMT2O60294 686 aaKnown RBP4.14□□□□□ -1.75
UPF3B-203ENST00000478840 POP4O95707 220 aaKnown RBP4.14□□□□□ -1.75
UPF3B-203ENST00000478840 IGHG3P01860 377 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 H2BFMP0C1H6 154 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 DBTP11182 482 aaKnown RBP4.14□□□□□ -1.75
UPF3B-203ENST00000478840 PVRP15151 417 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 SDC1P18827 310 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 ZNF10P21506 573 aaPredicted RBP4.14□□□□□ -1.75
UPF3B-203ENST00000478840 BDKRB1P46663 353 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 CSRP3P50461 194 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 ARHGDIAP52565 204 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 AP3M2P53677 418 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 RPL23AP62750 156 aaKnown RBP4.14□□□□□ -1.75
UPF3B-203ENST00000478840 NCBP1Q09161 790 aaKnown RBP4.14□□□□□ -1.75
UPF3B-203ENST00000478840 COX10Q12887 443 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 ELAVL2Q12926 359 aaKnown RBP4.14□□□□□ -1.75
UPF3B-203ENST00000478840 IDI1Q13907 227 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 ELAVL3Q14576 367 aaKnown RBP4.14□□□□□ -1.75
UPF3B-203ENST00000478840 SNAI3Q3KNW1 292 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 TMEM52BQ4KMG9 183 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 SCYL2Q6P3W7 929 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 TMUB2Q71RG4 321 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 NLRP9Q7RTR0 991 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 KIAA1328Q86T90 577 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 IFNEQ86WN2 208 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 CDH26Q8IXH8 852 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 UBQLNLQ8IYU4 475 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 BPIFB2Q8N4F0 458 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 OR10A7Q8NGE5 316 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 OR56B2PQ8NGI1 322 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 OR4D5Q8NGN0 318 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 OR8J1Q8NGP2 316 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 M1APQ8TC57 530 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 TBCKQ8TEA7 893 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 PELI1Q96FA3 418 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 SDSLQ96GA7 329 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 LINC00479Q96M42 142 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 NPY6RQ99463 290 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 SLC6A7Q99884 636 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 MAGT1Q9H0U3 335 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 FAM120CQ9NX05 1096 aaKnown RBP4.14□□□□□ -1.75
UPF3B-203ENST00000478840 EHFQ9NZC4 300 aa4.14□□□□□ -1.75
UPF3B-203ENST00000478840 PCSK1NQ9UHG2 260 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms