RNA–Protein interactions for RNA: ENST00000475251.1

SKA3-206, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 397 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-206ENST00000475251 NRF1Q16656 503 aa11.26□□□□□ -0.61
SKA3-206ENST00000475251 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.26□□□□□ -0.61
SKA3-206ENST00000475251 TSNAXIP1Q2TAA8 658 aa11.26□□□□□ -0.61
SKA3-206ENST00000475251 NCMAPQ5T1S8 102 aa11.26□□□□□ -0.61
SKA3-206ENST00000475251 LGSNQ5TDP6 509 aa11.26□□□□□ -0.61
SKA3-206ENST00000475251 DNAJC14Q6Y2X3 702 aaPredicted RBP11.26□□□□□ -0.61
SKA3-206ENST00000475251 ESPNLQ6ZVH7 1005 aa11.26□□□□□ -0.61
SKA3-206ENST00000475251 CCDC25Q86WR0 208 aa11.26□□□□□ -0.61
SKA3-206ENST00000475251 OR7G2Q8NG99 324 aa11.26□□□□□ -0.61
SKA3-206ENST00000475251 OR10D3Q8NH80 312 aa11.26□□□□□ -0.61
SKA3-206ENST00000475251 RAB3IL1Q8TBN0 382 aa11.26□□□□□ -0.61
SKA3-206ENST00000475251 HSD17B8Q92506 261 aa11.26□□□□□ -0.61
SKA3-206ENST00000475251 NSUN5Q96P11 429 aaKnown RBP11.26□□□□□ -0.61
SKA3-206ENST00000475251 BBS4Q96RK4 519 aa11.26□□□□□ -0.61
SKA3-206ENST00000475251 SLC35C2Q9NQQ7 365 aa11.26□□□□□ -0.61
SKA3-206ENST00000475251 XPR1Q9UBH6 696 aa11.26□□□□□ -0.61
SKA3-206ENST00000475251 CLEC4AQ9UMR7 237 aa11.26□□□□□ -0.61
SKA3-206ENST00000475251 MAGED1Q9Y5V3 778 aaPredicted RBP11.26□□□□□ -0.61
SKA3-206ENST00000475251 CR1P17927 2039 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 TTC36A6NLP5 189 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 C17orf51A8MQB3 221 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 PCDH7O60245 1069 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 ANGPTL1O95841 491 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 SOD3P08294 240 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 RPS17P08708 135 aaKnown RBP11.25□□□□□ -0.61
SKA3-206ENST00000475251 ME2P23368 584 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 IL32P24001 234 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 SLC6A8P48029 635 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 PLTPP55058 493 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 UAP1Q16222 522 aaPredicted RBP11.25□□□□□ -0.61
SKA3-206ENST00000475251 TMEM44Q2T9K0 475 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 CTU2Q2VPK5 515 aaKnown RBP11.25□□□□□ -0.61
SKA3-206ENST00000475251 ZNF672Q499Z4 452 aaPredicted RBP11.25□□□□□ -0.61
SKA3-206ENST00000475251 SPIN4Q56A73 249 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 ALKBH2Q6NS38 261 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 LETMD1Q6P1Q0 360 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 DNM1P46Q6ZS02 220 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 MARCH3Q86UD3 253 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 ZBTB8AQ96BR9 441 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 S100PBPQ96BU1 408 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 C11orf24Q96F05 449 aaPredicted RBP11.25□□□□□ -0.61
SKA3-206ENST00000475251 REXO5Q96IC2 774 aaKnown RBP11.25□□□□□ -0.61
SKA3-206ENST00000475251 NAPGQ99747 312 aaPredicted RBP11.25□□□□□ -0.61
SKA3-206ENST00000475251 RHNO1Q9BSD3 238 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 GRIP2Q9C0E4 1043 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 C12orf49Q9H741 205 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 TMEM160Q9NX00 188 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 GRHL1Q9NZI5 618 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 LPAR3Q9UBY5 353 aa11.25□□□□□ -0.61
SKA3-206ENST00000475251 UTP11Q9Y3A2 253 aaKnown RBP11.25□□□□□ -0.61
SKA3-206ENST00000475251 SONP18583 2426 aaKnown RBP11.25□□□□□ -0.61
SKA3-206ENST00000475251 C3orf80F5H4A9 247 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 ADAMDEC1O15204 470 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 ADAM11O75078 769 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 NME6O75414 186 aaPredicted RBP11.24□□□□□ -0.61
SKA3-206ENST00000475251 KCNH1O95259 989 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 IGHV4-39P01824 125 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 ADH6P28332 368 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 AGTR1P30556 359 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 PHBP35232 272 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 DSCR9P59020 149 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 RAC1P63000 192 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 PRR5P85299 388 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 ZNF844Q08AG5 666 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 ACSM2AQ08AH3 577 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 FAPQ12884 760 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 RNPS1Q15287 305 aaKnown RBP11.24□□□□□ -0.61
SKA3-206ENST00000475251 TMEM201Q5SNT2 666 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 ACSM2BQ68CK6 577 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 SSX8Q7RTT4 187 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 GTPBP8Q8N3Z3 284 aaPredicted RBP11.24□□□□□ -0.61
SKA3-206ENST00000475251 LILRB1Q8NHL6 650 aaPredicted RBP11.24□□□□□ -0.61
SKA3-206ENST00000475251 ZNF483Q8TF39 744 aaPredicted RBP11.24□□□□□ -0.61
SKA3-206ENST00000475251 MRRFQ96E11 262 aaKnown RBP11.24□□□□□ -0.61
SKA3-206ENST00000475251 ADGRG7Q96K78 797 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 BEX2Q9BXY8 128 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 POTEKPQ9BYX7 375 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 RAB17Q9H0T7 212 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 DDX18Q9NVP1 670 aaKnown RBP11.24□□□□□ -0.61
SKA3-206ENST00000475251 GRID1Q9ULK0 1009 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 C19orf53Q9UNZ5 99 aaPredicted RBP11.24□□□□□ -0.61
SKA3-206ENST00000475251 VDAC3Q9Y277 283 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 ABCA1O95477 2261 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 ROS1P08922 2347 aa11.24□□□□□ -0.61
SKA3-206ENST00000475251 HMX2A2RU54 273 aa11.23□□□□□ -0.61
SKA3-206ENST00000475251 C7orf72A4D263 438 aa11.23□□□□□ -0.61
SKA3-206ENST00000475251 CCDC151A5D8V7 595 aa11.23□□□□□ -0.61
SKA3-206ENST00000475251 CXCL13O43927 109 aa11.23□□□□□ -0.61
SKA3-206ENST00000475251 ULK1O75385 1050 aa11.23□□□□□ -0.61
SKA3-206ENST00000475251 THBS1P07996 1170 aa11.23□□□□□ -0.61
SKA3-206ENST00000475251 COL6A2P12110 1019 aa11.23□□□□□ -0.61
SKA3-206ENST00000475251 NTSP30990 170 aa11.23□□□□□ -0.61
SKA3-206ENST00000475251 THBS2P35442 1172 aa11.23□□□□□ -0.61
SKA3-206ENST00000475251 RFX3P48380 749 aa11.23□□□□□ -0.61
SKA3-206ENST00000475251 ZNF41P51814 821 aaPredicted RBP11.23□□□□□ -0.61
SKA3-206ENST00000475251 NCBP2P52298 156 aaKnown RBP eCLIP11.23□□□□□ -0.61
SKA3-206ENST00000475251 GNG11P61952 73 aa11.23□□□□□ -0.61
SKA3-206ENST00000475251 MRPS25P82663 173 aaKnown RBP11.23□□□□□ -0.61
SKA3-206ENST00000475251 P2RY6Q15077 328 aa11.23□□□□□ -0.61
SKA3-206ENST00000475251 RASA2Q15283 850 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms