RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 CCL27Q9Y4X3 112 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 PTGDR2Q9Y5Y4 395 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 AP4B1Q9Y6B7 739 aa17.8■□□□□ 0.44
COL9A3-210ENST00000472880 UQCRHLA0A096LP55 91 aa17.79■□□□□ 0.44
COL9A3-210ENST00000472880 COPEO14579 308 aa17.79■□□□□ 0.44
COL9A3-210ENST00000472880 CTIFO43310 598 aaKnown RBP17.79■□□□□ 0.44
COL9A3-210ENST00000472880 EMC8O43402 210 aa17.79■□□□□ 0.44
COL9A3-210ENST00000472880 SHBGP04278 402 aa17.79■□□□□ 0.44
COL9A3-210ENST00000472880 PRPS2P11908 318 aa17.79■□□□□ 0.44
COL9A3-210ENST00000472880 NEFHP12036 1026 aa17.79■□□□□ 0.44
COL9A3-210ENST00000472880 FCGR2AP12318 317 aa17.79■□□□□ 0.44
COL9A3-210ENST00000472880 PRR5P85299 388 aa17.79■□□□□ 0.44
COL9A3-210ENST00000472880 KIAA0040Q15053 153 aa17.79■□□□□ 0.44
COL9A3-210ENST00000472880 SGCBQ16585 318 aa17.79■□□□□ 0.44
COL9A3-210ENST00000472880 ANKRD26P1Q6NSI1 321 aa17.79■□□□□ 0.44
COL9A3-210ENST00000472880 SH2D5Q6ZV89 423 aa17.79■□□□□ 0.44
COL9A3-210ENST00000472880 METTL25Q8N6Q8 603 aa17.79■□□□□ 0.44
COL9A3-210ENST00000472880 CIDECQ96AQ7 238 aaPredicted RBP17.79■□□□□ 0.44
COL9A3-210ENST00000472880 PPCDCQ96CD2 204 aa17.79■□□□□ 0.44
COL9A3-210ENST00000472880 ZNF764Q96H86 408 aaPredicted RBP17.79■□□□□ 0.44
COL9A3-210ENST00000472880 WFIKKN1Q96NZ8 548 aa17.79■□□□□ 0.44
COL9A3-210ENST00000472880 CCT7Q99832 543 aa17.79■□□□□ 0.44
COL9A3-210ENST00000472880 ANKZF1Q9H8Y5 726 aa17.79■□□□□ 0.44
COL9A3-210ENST00000472880 PPCSQ9HAB8 311 aa17.79■□□□□ 0.44
COL9A3-210ENST00000472880 HHATLQ9HCP6 504 aa17.79■□□□□ 0.44
COL9A3-210ENST00000472880 ELOVL5Q9NYP7 299 aa17.79■□□□□ 0.44
COL9A3-210ENST00000472880 STOML1Q9UBI4 398 aa17.79■□□□□ 0.44
COL9A3-210ENST00000472880 FIS1Q9Y3D6 152 aa17.79■□□□□ 0.44
COL9A3-210ENST00000472880 IGLV3-32A0A0A0MS00 114 aa17.78■□□□□ 0.44
COL9A3-210ENST00000472880 NPIPB8E9PQR5 432 aa17.78■□□□□ 0.44
COL9A3-210ENST00000472880 IGKV1D-16P01601 117 aa17.78■□□□□ 0.44
COL9A3-210ENST00000472880 CD8BP10966 210 aa17.78■□□□□ 0.44
COL9A3-210ENST00000472880 HOXC12P31275 282 aa17.78■□□□□ 0.44
COL9A3-210ENST00000472880 CCKARP32238 428 aa17.78■□□□□ 0.44
COL9A3-210ENST00000472880 UGT2B10P36537 528 aa17.78■□□□□ 0.44
COL9A3-210ENST00000472880 PRKAG1P54619 331 aa17.78■□□□□ 0.44
COL9A3-210ENST00000472880 PPP4R4Q6NUP7 873 aa17.78■□□□□ 0.44
COL9A3-210ENST00000472880 ZNF474Q6S9Z5 364 aaPredicted RBP17.78■□□□□ 0.44
COL9A3-210ENST00000472880 CDRT4Q8N9R6 151 aa17.78■□□□□ 0.44
COL9A3-210ENST00000472880 CEP70Q8NHQ1 597 aa17.78■□□□□ 0.44
COL9A3-210ENST00000472880 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.78■□□□□ 0.44
COL9A3-210ENST00000472880 SLC9A6Q92581 669 aa17.78■□□□□ 0.44
COL9A3-210ENST00000472880 ZBED6CLQ96FA7 236 aaPredicted RBP17.78■□□□□ 0.44
COL9A3-210ENST00000472880 PIK3IP1Q96FE7 263 aa17.78■□□□□ 0.44
COL9A3-210ENST00000472880 TSSK3Q96PN8 268 aa17.78■□□□□ 0.44
COL9A3-210ENST00000472880 C12orf65Q9H3J6 166 aaKnown RBP17.78■□□□□ 0.44
COL9A3-210ENST00000472880 REEP4Q9H6H4 257 aa17.78■□□□□ 0.44
COL9A3-210ENST00000472880 PROCRQ9UNN8 238 aa17.78■□□□□ 0.44
COL9A3-210ENST00000472880 VDAC3Q9Y277 283 aa17.78■□□□□ 0.44
COL9A3-210ENST00000472880 ZNF469Q96JG9 3925 aaPredicted RBP17.78■□□□□ 0.44
COL9A3-210ENST00000472880 MAP1AP78559 2803 aaPredicted RBP17.77■□□□□ 0.44
COL9A3-210ENST00000472880 SHISA8B8ZZ34 492 aa17.77■□□□□ 0.44
COL9A3-210ENST00000472880 AZIN1O14977 448 aa17.77■□□□□ 0.44
COL9A3-210ENST00000472880 AKAP10O43572 662 aa17.77■□□□□ 0.44
COL9A3-210ENST00000472880 NKX2-2O95096 273 aa17.77■□□□□ 0.44
COL9A3-210ENST00000472880 CHEK2O96017 543 aa17.77■□□□□ 0.44
COL9A3-210ENST00000472880 ZNF17P17021 662 aa17.77■□□□□ 0.44
COL9A3-210ENST00000472880 HOXB4P17483 251 aaPredicted RBP17.77■□□□□ 0.44
COL9A3-210ENST00000472880 SDC1P18827 310 aa17.77■□□□□ 0.44
COL9A3-210ENST00000472880 CRYGSP22914 178 aa17.77■□□□□ 0.44
COL9A3-210ENST00000472880 RPL38P63173 70 aaKnown RBP17.77■□□□□ 0.44
COL9A3-210ENST00000472880 NKX6-1P78426 367 aaPredicted RBP17.77■□□□□ 0.44
COL9A3-210ENST00000472880 OCRLQ01968 901 aa17.77■□□□□ 0.44
COL9A3-210ENST00000472880 ZNF385BQ569K4 471 aa17.77■□□□□ 0.44
COL9A3-210ENST00000472880 SHEQ5VZ18 495 aa17.77■□□□□ 0.44
COL9A3-210ENST00000472880 GALNT10Q86SR1 603 aa17.77■□□□□ 0.44
COL9A3-210ENST00000472880 BIVMQ86UB2 503 aa17.77■□□□□ 0.44
COL9A3-210ENST00000472880 EXOC3L1Q86VI1 746 aa17.77■□□□□ 0.44
COL9A3-210ENST00000472880 TDRPQ86YL5 185 aa17.77■□□□□ 0.44
COL9A3-210ENST00000472880 FBXO30Q8TB52 745 aa17.77■□□□□ 0.44
COL9A3-210ENST00000472880 MS4A4EQ96PG1 132 aa17.77■□□□□ 0.44
COL9A3-210ENST00000472880 PRRG4Q9BZD6 226 aa17.77■□□□□ 0.44
COL9A3-210ENST00000472880 SH3BP4Q9P0V3 963 aa17.77■□□□□ 0.44
COL9A3-210ENST00000472880 FLNAP21333 2647 aaKnown RBP17.77■□□□□ 0.43
COL9A3-210ENST00000472880 ACANP16112 2415 aa17.76■□□□□ 0.43
COL9A3-210ENST00000472880 DEFB108AA8MXU0 73 aa17.76■□□□□ 0.43
COL9A3-210ENST00000472880 C16orf97H3BN30 126 aa17.76■□□□□ 0.43
COL9A3-210ENST00000472880 EIF1AYO14602 144 aaKnown RBP17.76■□□□□ 0.43
COL9A3-210ENST00000472880 NDUFB5O43674 189 aa17.76■□□□□ 0.43
COL9A3-210ENST00000472880 TBX19O60806 448 aa17.76■□□□□ 0.43
COL9A3-210ENST00000472880 OXSR1O95747 527 aaPredicted RBP17.76■□□□□ 0.43
COL9A3-210ENST00000472880 CGAP01215 116 aa17.76■□□□□ 0.43
COL9A3-210ENST00000472880 KRT4P19013 534 aa17.76■□□□□ 0.43
COL9A3-210ENST00000472880 EIF1AXP47813 144 aaKnown RBP17.76■□□□□ 0.43
COL9A3-210ENST00000472880 MANFP55145 182 aaKnown RBP17.76■□□□□ 0.43
COL9A3-210ENST00000472880 TMEM44Q2T9K0 475 aa17.76■□□□□ 0.43
COL9A3-210ENST00000472880 APOOLQ6UXV4 268 aa17.76■□□□□ 0.43
COL9A3-210ENST00000472880 FAM214BQ7L5A3 538 aa17.76■□□□□ 0.43
COL9A3-210ENST00000472880 GGNQ86UU5 652 aa17.76■□□□□ 0.43
COL9A3-210ENST00000472880 C10orf107Q8IVU9 208 aa17.76■□□□□ 0.43
COL9A3-210ENST00000472880 C4orf33Q8N1A6 199 aa17.76■□□□□ 0.43
COL9A3-210ENST00000472880 NUP43Q8NFH3 380 aa17.76■□□□□ 0.43
COL9A3-210ENST00000472880 OR2T11Q8NH01 316 aa17.76■□□□□ 0.43
COL9A3-210ENST00000472880 CLHC1Q8NHS4 586 aa17.76■□□□□ 0.43
COL9A3-210ENST00000472880 EPS8L3Q8TE67 593 aaKnown RBP17.76■□□□□ 0.43
COL9A3-210ENST00000472880 HOXB13Q92826 284 aaPredicted RBP17.76■□□□□ 0.43
COL9A3-210ENST00000472880 C18orf12Q96KH6 178 aa17.76■□□□□ 0.43
COL9A3-210ENST00000472880 FCRL1Q96LA6 429 aa17.76■□□□□ 0.43
COL9A3-210ENST00000472880 TRMOQ9BU70 441 aa17.76■□□□□ 0.43
COL9A3-210ENST00000472880 EMC9Q9Y3B6 208 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms