RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 C17orf105B2RV13 164 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 C21orf140B9A014 251 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 CLIC1O00299 241 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 PLOD2O00469 737 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 NME4O00746 187 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 OR10H2O60403 315 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 PLOD3O60568 738 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 ERN1O75460 977 aaKnown RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 SEC24DO94855 1032 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 SCGB1D2O95969 90 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 IGKV3-11P04433 115 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 HMGN2P05204 90 aaKnown RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 RPSAP08865 295 aaKnown RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 ZCCHC18P0CG32 403 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 COX6A1P12074 109 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 LIFP15018 202 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 MMP11P24347 488 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 APEX1P27695 318 aaKnown RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 PTDSS1P48651 473 aaKnown RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 TRPC1P48995 793 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 MTNR1BP49286 362 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 CCT3P49368 545 aaKnown RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 EMDP50402 254 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 PGDP52209 483 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 PRKAG1P54619 331 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 OR4D2P58180 307 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 PSME3P61289 254 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 FUT7Q11130 342 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 ART3Q13508 389 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 ZNF267Q14586 743 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 PCOLCEQ15113 449 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 ELAVL1Q15717 326 aaKnown RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 SFT2D3Q587I9 215 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 ATP1A1-AS1Q5TC04 95 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 HACD2Q6Y1H2 254 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 CXXC5Q7LFL8 322 aaKnown RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 CPEB2Q7Z5Q1 589 aaKnown RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 PPP1R32Q7Z5V6 425 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 SLC15A3Q8IY34 581 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 SAMD14Q8IZD0 417 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 NATD1Q8N6N6 113 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 LINC00482Q8N8I6 264 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 ZNF615Q8N8J6 731 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 PCYOX1LQ8NBM8 494 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 APCDD1LQ8NCL9 501 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 NFAM1Q8NET5 270 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 OR11G2Q8NGC1 345 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 ZNF675Q8TD23 568 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 ADAMTS17Q8TE56 1095 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 ZNF721Q8TF20 911 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 TMEM125Q96AQ2 219 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 ROPN1LQ96C74 230 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 NXPE2Q96DL1 559 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 C16orf58Q96GQ5 468 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 SENP5Q96HI0 755 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 ZNF578Q96N58 590 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 DGAT2Q96PD7 388 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 CPPED1Q9BRF8 314 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 SLC35A5Q9BS91 424 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 TUBB6Q9BUF5 446 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 NUDT9Q9BW91 350 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 GPR87Q9BY21 358 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 OR10A5Q9H207 317 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 C1orf21Q9H246 121 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 TPT1P8Q9HAU6 139 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 ADAP2Q9NPF8 381 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 ZCCHC3Q9NUD5 404 aaKnown RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 GIMAP4Q9NUV9 329 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 CMTM6Q9NX76 183 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 NTMQ9P121 344 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 C19orf53Q9UNZ5 99 aaPredicted RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 ERVK-19Q9WJR5 959 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 POMPQ9Y244 141 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 PCDHGA9Q9Y5G4 932 aaKnown RBP4.38□□□□□ -1.71
SF3B1-208ENST00000470268 PCDHGA6Q9Y5G7 932 aa4.38□□□□□ -1.71
SF3B1-208ENST00000470268 SEC16AO15027 2179 aa4.37□□□□□ -1.71
SF3B1-208ENST00000470268 SPTBN2O15020 2390 aa4.37□□□□□ -1.71
SF3B1-208ENST00000470268 A0A087WV62 115 aa4.37□□□□□ -1.71
SF3B1-208ENST00000470268 IGHV1-45A0A0A0MS14 117 aa4.37□□□□□ -1.71
SF3B1-208ENST00000470268 A0A1W2PQ72 361 aa4.37□□□□□ -1.71
SF3B1-208ENST00000470268 MED19A0JLT2 244 aaPredicted RBP4.37□□□□□ -1.71
SF3B1-208ENST00000470268 PRORSD1PA6NEY8 169 aa4.37□□□□□ -1.71
SF3B1-208ENST00000470268 SAGE2PA6NJ88 616 aa4.37□□□□□ -1.71
SF3B1-208ENST00000470268 HNRNPCL1O60812 293 aaKnown RBP4.37□□□□□ -1.71
SF3B1-208ENST00000470268 CREG1O75629 220 aa4.37□□□□□ -1.71
SF3B1-208ENST00000470268 BAG2O95816 211 aa4.37□□□□□ -1.71
SF3B1-208ENST00000470268 NPPAP01160 153 aa4.37□□□□□ -1.71
SF3B1-208ENST00000470268 CELA2AP08217 269 aa4.37□□□□□ -1.71
SF3B1-208ENST00000470268 ETFAP13804 333 aa4.37□□□□□ -1.71
SF3B1-208ENST00000470268 GPX2P18283 190 aa4.37□□□□□ -1.71
SF3B1-208ENST00000470268 TNNI3P19429 210 aa4.37□□□□□ -1.71
SF3B1-208ENST00000470268 UQCRC2P22695 453 aa4.37□□□□□ -1.71
SF3B1-208ENST00000470268 OTX2P32243 289 aa4.37□□□□□ -1.71
SF3B1-208ENST00000470268 GALNSP34059 522 aa4.37□□□□□ -1.71
SF3B1-208ENST00000470268 SOAT1P35610 550 aa4.37□□□□□ -1.71
SF3B1-208ENST00000470268 MAP3K8P41279 467 aa4.37□□□□□ -1.71
SF3B1-208ENST00000470268 FOLR3P41439 243 aa4.37□□□□□ -1.71
SF3B1-208ENST00000470268 GZMMP51124 257 aa4.37□□□□□ -1.71
SF3B1-208ENST00000470268 SLC7A2P52569 658 aa4.37□□□□□ -1.71
SF3B1-208ENST00000470268 SLC37A1P57057 533 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms