RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 TPMTP51580 245 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 ZNF136P52737 540 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 CDH11P55287 796 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 ARF3P61204 181 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-217ENST00000466159 PSPHP78330 225 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 RUNX1T1Q06455 604 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 DBPQ10586 325 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-217ENST00000466159 HNRNPA0Q13151 305 aaKnown RBP8.33□□□□□ -1.08
SYNE1-217ENST00000466159 ZNF79Q15937 498 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 PLK5Q496M5 336 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 ZNF628Q5EBL2 1059 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 TMPRSS11AQ6ZMR5 421 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 MBOAT2Q6ZWT7 520 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 TRIM48Q8IWZ4 208 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 CELF2-AS1Q8N7Q2 184 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 FLCNQ8NFG4 579 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 OSTF1Q92882 214 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 SLC25A46Q96AG3 418 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 TRIM45Q9H8W5 580 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-217ENST00000466159 FBRSQ9HAH7 460 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 TBC1D24Q9ULP9 559 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 PAIP2BQ9ULR5 123 aaKnown RBP8.33□□□□□ -1.08
SYNE1-217ENST00000466159 GON4LQ3T8J9 2241 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 URADA6NGE7 173 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 PEX12O00623 359 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 FGF17O60258 216 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 OR5F1O95221 314 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 DEFA1P59665 94 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 DEFA3P59666 94 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 EEF1A1P68104 462 aaKnown RBP8.33□□□□□ -1.08
SYNE1-217ENST00000466159 DUSP8Q13202 625 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 BAK1Q16611 211 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 CRTC2Q53ET0 693 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-217ENST00000466159 AADACL4Q5VUY2 407 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 B3GLCTQ6Y288 498 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 HSDL2Q6YN16 418 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 ZNF620Q6ZNG0 422 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 SAMD14Q8IZD0 417 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-217ENST00000466159 CAMKVQ8NCB2 501 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 SAMD8Q96LT4 415 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 PHOX2BQ99453 314 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 ZFYVE21Q9BQ24 234 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 SLX1AQ9BQ83 275 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 ARHGAP9Q9BRR9 750 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 CCDC32Q9BV29 185 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 TCEAL2Q9H3H9 227 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-217ENST00000466159 SLC28A3Q9HAS3 691 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 STARD5Q9NSY2 213 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 PTGFRNQ9P2B2 879 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 PLEKHB1Q9UF11 243 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-217ENST00000466159 KCNE5Q9UJ90 142 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 TDRD6O60522 2096 aaKnown RBP8.33□□□□□ -1.08
SYNE1-217ENST00000466159 IQCMA0A1B0GVH7 501 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 FAM183AA6NL82 134 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 STK25O00506 426 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 AGR2O95994 175 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 IL1AP01583 271 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 NT5EP21589 574 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 HTR2AP28223 471 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 SLC1A3P43003 542 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 TMED10P49755 219 aaKnown RBP8.33□□□□□ -1.08
SYNE1-217ENST00000466159 CAV3P56539 151 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 PPP1CAP62136 330 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 FABP5Q01469 135 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 TPBGQ13641 420 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 EXOSC7Q15024 291 aaKnown RBP8.33□□□□□ -1.08
SYNE1-217ENST00000466159 PGGHGQ32M88 737 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 ZNF542PQ5EBM4 170 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 FHL5Q5TD97 284 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 WDR88Q6ZMY6 472 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 Q6ZSR6 202 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 ABHD13Q7L211 337 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 ZNF761Q86XN6 746 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-217ENST00000466159 ZNF485Q8NCK3 441 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 RPLP0P6Q8NHW5 317 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 OTULINQ96BN8 352 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 RIPOR3Q96MK2 946 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 PRSS27Q9BQR3 290 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 PRRG3Q9BZD7 231 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 ZNF350Q9GZX5 532 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 TWSG1Q9GZX9 223 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 PIGUQ9H490 435 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 SIAEQ9HAT2 523 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 ABCB9Q9NP78 766 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 TIGARQ9NQ88 270 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 NLGN3Q9NZ94 848 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 C19orf53Q9UNZ5 99 aaPredicted RBP8.33□□□□□ -1.08
SYNE1-217ENST00000466159 TRAPPC4Q9Y296 219 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 EXOSC1Q9Y3B2 195 aaKnown RBP8.33□□□□□ -1.08
SYNE1-217ENST00000466159 CMAHPQ9Y471 501 aa8.33□□□□□ -1.08
SYNE1-217ENST00000466159 BRWD1Q9NSI6 2320 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 A0A1W2PQL4 384 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-217ENST00000466159 IRGMA1A4Y4 181 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 SOCS6O14544 535 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 TNFRSF10CO14798 259 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 HCRTR1O43613 425 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 CELA2BP08218 269 aaPredicted RBP8.32□□□□□ -1.08
SYNE1-217ENST00000466159 ZGLP1P0C6A0 271 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 SHC2P98077 582 aa8.32□□□□□ -1.08
SYNE1-217ENST00000466159 MADCAM1Q13477 382 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms