RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 Q6ZS52 159 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 DGLUCYQ7Z3D6 616 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 SLC44A3Q8N4M1 653 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 AMER3Q8N944 861 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 DYNC2LI1Q8TCX1 351 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 MKRN2Q9H000 416 aaKnown RBP10.91□□□□□ -0.66
NPHP4-204ENST00000460696 CLEC4MQ9H2X3 399 aaPredicted RBP10.91□□□□□ -0.66
NPHP4-204ENST00000460696 NEK6Q9HC98 313 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 A4GALTQ9NPC4 353 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 ZNF226Q9NYT6 803 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 ADAM29Q9UKF5 820 aa10.91□□□□□ -0.66
NPHP4-204ENST00000460696 SEMA4FO95754 770 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 HTR1AP08908 422 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 SLC6A6P31641 620 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 CTHP32929 405 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 NR4A2P43354 598 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 EMP3P54852 163 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 INAVAQ3KP66 663 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 PUS10Q3MIT2 529 aaKnown RBP10.9□□□□□ -0.66
NPHP4-204ENST00000460696 ALG10BQ5I7T1 473 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 SCAIQ8N9R8 606 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 MMP28Q9H239 520 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 PRTFDC1Q9NRG1 225 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 ZNF236Q9UL36 1845 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 SPAG17Q6Q759 2223 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 METTL15A6NJ78 407 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 A8MVJ9 347 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 GPR89AB7ZAQ6 455 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 KCNJ13O60928 360 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 PTTG1O95997 202 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 DBIP07108 87 aaKnown RBP10.9□□□□□ -0.66
NPHP4-204ENST00000460696 GPR89BP0CG08 455 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 GRPRP30550 384 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 GUCA1AP43080 201 aaPredicted RBP10.9□□□□□ -0.66
NPHP4-204ENST00000460696 CD97P48960 835 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 GID4Q8IVV7 300 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 ZNF566Q969W8 418 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 PTCHD1Q96NR3 888 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 LRRC3BQ96PB8 259 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 DPYSL5Q9BPU6 564 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 GABARAPL3Q9BY60 117 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 MROQ9BYG7 248 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 PITHD1Q9GZP4 211 aaPredicted RBP10.9□□□□□ -0.66
NPHP4-204ENST00000460696 SERGEFQ9UGK8 458 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 ING4Q9UNL4 249 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 TMEM5Q9Y2B1 443 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 R4GN57 208 aa10.9□□□□□ -0.66
NPHP4-204ENST00000460696 A0A0A6YYC8 382 aaPredicted RBP10.9□□□□□ -0.67
NPHP4-204ENST00000460696 I3L1I5 382 aaPredicted RBP10.9□□□□□ -0.67
NPHP4-204ENST00000460696 CISD3P0C7P0 127 aa10.9□□□□□ -0.67
NPHP4-204ENST00000460696 THEGLP0DJG4 465 aa10.9□□□□□ -0.67
NPHP4-204ENST00000460696 F8A1P23610 371 aa10.9□□□□□ -0.67
NPHP4-204ENST00000460696 PSMA3P25788 255 aa10.9□□□□□ -0.67
NPHP4-204ENST00000460696 IL12BP29460 328 aa10.9□□□□□ -0.67
NPHP4-204ENST00000460696 STAT5AP42229 794 aa10.9□□□□□ -0.67
NPHP4-204ENST00000460696 LIM2P55344 173 aa10.9□□□□□ -0.67
NPHP4-204ENST00000460696 MLF2Q15773 248 aaPredicted RBP10.9□□□□□ -0.67
NPHP4-204ENST00000460696 UBE2UQ5VVX9 321 aa10.9□□□□□ -0.67
NPHP4-204ENST00000460696 SAXO2Q658L1 398 aa10.9□□□□□ -0.67
NPHP4-204ENST00000460696 LINGO2Q7L985 606 aa10.9□□□□□ -0.67
NPHP4-204ENST00000460696 OR52E2Q8NGJ4 325 aa10.9□□□□□ -0.67
NPHP4-204ENST00000460696 OR2A1Q8NGT9 310 aa10.9□□□□□ -0.67
NPHP4-204ENST00000460696 MS4A6EQ96DS6 147 aa10.9□□□□□ -0.67
NPHP4-204ENST00000460696 ELP4Q96EB1 424 aa10.9□□□□□ -0.67
NPHP4-204ENST00000460696 MED20Q9H944 212 aa10.9□□□□□ -0.67
NPHP4-204ENST00000460696 TMEM138Q9NPI0 162 aa10.9□□□□□ -0.67
NPHP4-204ENST00000460696 ENAMQ9NRM1 1142 aa10.9□□□□□ -0.67
NPHP4-204ENST00000460696 KCMF1Q9P0J7 381 aa10.9□□□□□ -0.67
NPHP4-204ENST00000460696 TBC1D29Q9UFV1 150 aa10.9□□□□□ -0.67
NPHP4-204ENST00000460696 MRTO4Q9UKD2 239 aaKnown RBP10.9□□□□□ -0.67
NPHP4-204ENST00000460696 KLK4Q9Y5K2 254 aa10.9□□□□□ -0.67
NPHP4-204ENST00000460696 LRRC37A2A6NM11 1700 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 UBXN7O94888 489 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 EPHA5P54756 1037 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 EIF2B5Q13144 721 aaKnown RBP10.89□□□□□ -0.67
NPHP4-204ENST00000460696 ACSM5Q6NUN0 579 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 GDPGP1Q6ZNW5 385 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 RNF165Q6ZSG1 346 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 ZER1Q7Z7L7 766 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 LAX1Q8IWV1 398 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 FBXL6Q8N531 539 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 CCL4L1Q8NHW4 92 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 SPRYD4Q8WW59 207 aaPredicted RBP10.89□□□□□ -0.67
NPHP4-204ENST00000460696 C5orf34Q96MH7 638 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 TTYH2Q9BSA4 534 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 MOV10Q9HCE1 1003 aaKnown RBP10.89□□□□□ -0.67
NPHP4-204ENST00000460696 NLKQ9UBE8 527 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 APOBEC3BQ9UH17 382 aaKnown RBP10.89□□□□□ -0.67
NPHP4-204ENST00000460696 NTNG1Q9Y2I2 539 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 NAALAD2Q9Y3Q0 740 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 TRAV6A0A075B6T7 132 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 FCMRO60667 390 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 CLEC2LP0C7M8 214 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 F3P13726 295 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 OMPP47874 163 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 SOX2P48431 317 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 BNC1Q01954 994 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 SLX4IPQ5VYV7 408 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 NANOGNBQ7Z5D8 188 aa10.89□□□□□ -0.67
NPHP4-204ENST00000460696 TSEN15Q8WW01 171 aaKnown RBP10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms