RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 ADGRF3Q8IZF5 1079 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 HCAR2Q8TDS4 363 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 GGHQ92820 318 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 BADQ92934 168 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 YIPF5Q969M3 257 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 GAL3ST4Q96RP7 486 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 CCNL2Q96S94 520 aaPredicted RBP12.59□□□□□ -0.39
USP40-208ENST00000450966 CD180Q99467 661 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 MEPEQ9NQ76 525 aaPredicted RBP12.59□□□□□ -0.39
USP40-208ENST00000450966 ABRACLQ9P1F3 81 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 FBXL2Q9UKC9 423 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 A0A087X0M5 115 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 A0A1B0GX30 115 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 GOT2P00505 430 aaKnown RBP12.59□□□□□ -0.39
USP40-208ENST00000450966 ZNF823P16415 610 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 TAF1AQ15573 450 aaPredicted RBP12.59□□□□□ -0.39
USP40-208ENST00000450966 LIX1LQ8IVB5 337 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 MITD1Q8WV92 249 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 EPYCQ99645 322 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 NIPSNAP3BQ9BS92 247 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 PATZ1Q9HBE1 687 aaKnown RBP12.59□□□□□ -0.39
USP40-208ENST00000450966 LYRM2Q9NU23 88 aaPredicted RBP12.59□□□□□ -0.39
USP40-208ENST00000450966 CH25HO95992 272 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 CD3GP09693 182 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 CSF2RAP15509 400 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 EMP3P54852 163 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 H3F3AP84243 136 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 ALG10BQ5I7T1 473 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 SLC6A19Q695T7 634 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 TMEM81Q6P7N7 255 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 CAMKVQ8NCB2 501 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 B3GNT7Q8NFL0 401 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 OR7D4Q8NG98 312 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 RAB7BQ96AH8 199 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 NUS1Q96E22 293 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 MYBPHLA2RUH7 354 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 SCO2O43819 266 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 ACPPP15309 386 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 PTTG1IPP53801 180 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 HERV-K104P61576 105 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 SEC61A1P61619 476 aaKnown RBP12.59□□□□□ -0.39
USP40-208ENST00000450966 ECM1Q16610 540 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 GTDC1Q4AE62 458 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 SERPINA9Q86WD7 417 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 TMPRSS12Q86WS5 348 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 LINC00518Q8N0U6 118 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 LRIG1Q96JA1 1093 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 ELF4Q99607 663 aaPredicted RBP12.59□□□□□ -0.39
USP40-208ENST00000450966 FAM83CQ9BQN1 747 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 SLC2A11Q9BYW1 496 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 ACOXLQ9NUZ1 547 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 CD84Q9UIB8 345 aa12.59□□□□□ -0.39
USP40-208ENST00000450966 SLC31A1O15431 190 aa12.58□□□□□ -0.39
USP40-208ENST00000450966 TAGLN2P37802 199 aaKnown RBP12.58□□□□□ -0.39
USP40-208ENST00000450966 TAS2R20P59543 309 aa12.58□□□□□ -0.39
USP40-208ENST00000450966 TNFAIP8L2Q6P589 184 aaPredicted RBP12.58□□□□□ -0.39
USP40-208ENST00000450966 TMEM220Q6QAJ8 160 aa12.58□□□□□ -0.39
USP40-208ENST00000450966 OR13C2Q8NGS9 318 aa12.58□□□□□ -0.39
USP40-208ENST00000450966 HMGB4Q8WW32 186 aa12.58□□□□□ -0.39
USP40-208ENST00000450966 SMARCD2Q92925 531 aa12.58□□□□□ -0.39
USP40-208ENST00000450966 ADIPOR1Q96A54 375 aa12.58□□□□□ -0.39
USP40-208ENST00000450966 BORCS7Q96B45 105 aa12.58□□□□□ -0.39
USP40-208ENST00000450966 TOX2Q96NM4 488 aa12.58□□□□□ -0.39
USP40-208ENST00000450966 ATXN7L1Q9ULK2 861 aaPredicted RBP12.58□□□□□ -0.39
USP40-208ENST00000450966 P2RX6O15547 441 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 VEGFDO43915 354 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 RPP14O95059 124 aaKnown RBP12.58□□□□□ -0.4
USP40-208ENST00000450966 AHSGP02765 367 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 BPIP17213 487 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 PTGER3P43115 390 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 RBMS2Q15434 407 aaKnown RBP12.58□□□□□ -0.4
USP40-208ENST00000450966 YIF1BQ5BJH7 314 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 FAM129CQ86XR2 697 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 TMEM125Q96AQ2 219 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 UHRF1Q96T88 793 aaPredicted RBP12.58□□□□□ -0.4
USP40-208ENST00000450966 P2RY13Q9BPV8 354 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 MKKSQ9NPJ1 570 aaPredicted RBP12.58□□□□□ -0.4
USP40-208ENST00000450966 C4BP0C0L5 1744 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 C2CD4BA6NLJ0 364 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 B3GALT2O43825 422 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 IVDP26440 423 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 BMPR1AP36894 532 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 NSG1P42857 185 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 TMEM88Q6PEY1 159 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 GDPD4Q6W3E5 623 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 HMCESQ96FZ2 354 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 HIPK2Q9H2X6 1198 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 DMAC2Q9NW81 257 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 AJAP1Q9UKB5 411 aaPredicted RBP12.58□□□□□ -0.4
USP40-208ENST00000450966 EXO1Q9UQ84 846 aaKnown RBP12.58□□□□□ -0.4
USP40-208ENST00000450966 FCF1Q9Y324 198 aaKnown RBP12.58□□□□□ -0.4
USP40-208ENST00000450966 FAM96BQ9Y3D0 163 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 TIMM8BQ9Y5J9 83 aaPredicted RBP12.58□□□□□ -0.4
USP40-208ENST00000450966 TSPAN11A1L157 253 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 BPNT1O95861 308 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 HMGCS1Q01581 520 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 ACTBL2Q562R1 376 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 TTLL10Q6ZVT0 673 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 USP51Q70EK9 711 aa12.58□□□□□ -0.4
USP40-208ENST00000450966 TPRA1Q86W33 373 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms