RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 LIMS4P0CW20 117 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 ACADLP28330 430 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 THBS2P35442 1172 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 FEN1P39748 380 aaKnown RBP18.01■□□□□ 0.47
HMGA1-205ENST00000447654 DGKGP49619 791 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 VEGFBP49765 207 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 RPS24P62847 133 aaKnown RBP18.01■□□□□ 0.47
HMGA1-205ENST00000447654 RPS27AP62979 156 aaKnown RBP18.01■□□□□ 0.47
HMGA1-205ENST00000447654 UBA52P62987 128 aaKnown RBP18.01■□□□□ 0.47
HMGA1-205ENST00000447654 BDH1Q02338 343 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 ECH1Q13011 328 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 SERTAD2Q14140 314 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 ZNF630Q2M218 657 aaPredicted RBP18.01■□□□□ 0.47
HMGA1-205ENST00000447654 OTOP2Q7RTS6 562 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 TMEM41AQ96HV5 264 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 CPEB1Q9BZB8 566 aaKnown RBP18.01■□□□□ 0.47
HMGA1-205ENST00000447654 ZFP57Q9NU63 452 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 TEX10Q9NXF1 929 aaPredicted RBP18.01■□□□□ 0.47
HMGA1-205ENST00000447654 RASL12Q9NYN1 266 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 AKAP7Q9P0M2 348 aaPredicted RBP18.01■□□□□ 0.47
HMGA1-205ENST00000447654 MIOXQ9UGB7 285 aa18.01■□□□□ 0.47
HMGA1-205ENST00000447654 H3BNC9 293 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 UBE2CO00762 179 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 PCDH7O60245 1069 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 PRAMEF11O60813 436 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 STK16O75716 305 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 EGFP01133 1207 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 PTAFRP25105 342 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 HOXD9P28356 352 aaPredicted RBP18■□□□□ 0.47
HMGA1-205ENST00000447654 KCNJ3P48549 501 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 PSMA6P60900 246 aaKnown RBP18■□□□□ 0.47
HMGA1-205ENST00000447654 SF1Q15637 639 aaKnown RBP18■□□□□ 0.47
HMGA1-205ENST00000447654 GLDNQ6ZMI3 551 aaPredicted RBP18■□□□□ 0.47
HMGA1-205ENST00000447654 MOB3CQ70IA8 216 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 LDLRAD3Q86YD5 345 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 HAVCR2Q8TDQ0 301 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 PNPLA2Q96AD5 504 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 VWCEQ96DN2 955 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 RNFT2Q96EX2 444 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 APIPQ96GX9 242 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 LRR1Q96L50 414 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 APOLD1Q96LR9 279 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 DEFB118Q96PH6 123 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 CHIAQ9BZP6 476 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 ENKD1Q9H0I2 346 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 BARX1Q9HBU1 254 aaPredicted RBP18■□□□□ 0.47
HMGA1-205ENST00000447654 TVP23BQ9NYZ1 205 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 CFAP97Q9P2B7 532 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 SLC22A7Q9Y694 548 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 TP53BP1Q12888 1972 aaPredicted RBP18■□□□□ 0.47
HMGA1-205ENST00000447654 KCNE1BA0A087WTH5 132 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 C2orf78A6NCI8 922 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 MID1O15344 667 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 RGS9O75916 674 aaPredicted RBP18■□□□□ 0.47
HMGA1-205ENST00000447654 LAG3P18627 525 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 PSMB1P20618 241 aaKnown RBP18■□□□□ 0.47
HMGA1-205ENST00000447654 DDX6P26196 483 aaKnown RBP eCLIP18■□□□□ 0.472e-10■□□□□ 8.7
HMGA1-205ENST00000447654 SPAM1P38567 509 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 RGRP47804 291 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 GMFBP60983 142 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 RAB5BP61020 215 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 MLLT1Q03111 559 aaPredicted RBP18■□□□□ 0.47
HMGA1-205ENST00000447654 RELQ04864 619 aaPredicted RBP18■□□□□ 0.47
HMGA1-205ENST00000447654 ZNF425Q6IV72 752 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 SLC8B1Q6J4K2 584 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 PSAPL1Q6NUJ1 521 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 Q6ZTK2 550 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 GLT6D1Q7Z4J2 308 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 NPAS3Q8IXF0 933 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 PIANPQ8IYJ0 282 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 OR14A16Q8NHC5 309 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 SMIM14Q96QK8 99 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 UTP23Q9BRU9 249 aaKnown RBP18■□□□□ 0.47
HMGA1-205ENST00000447654 TMED9Q9BVK6 235 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 BTBD1Q9H0C5 482 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 C1GALT1Q9NS00 363 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 WBP1LQ9NX94 342 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 BACE2Q9Y5Z0 518 aa18■□□□□ 0.47
HMGA1-205ENST00000447654 ZFP37Q9Y6Q3 630 aaPredicted RBP18■□□□□ 0.47
HMGA1-205ENST00000447654 TRAPPC13A5PLN9 417 aa17.99■□□□□ 0.47
HMGA1-205ENST00000447654 SIX6O95475 246 aa17.99■□□□□ 0.47
HMGA1-205ENST00000447654 GUCA1CO95843 209 aa17.99■□□□□ 0.47
HMGA1-205ENST00000447654 HMGA1P17096 107 aaKnown RBP17.99■□□□□ 0.47
HMGA1-205ENST00000447654 LPOP22079 712 aaPredicted RBP17.99■□□□□ 0.47
HMGA1-205ENST00000447654 SMIM11AP58511 58 aa17.99■□□□□ 0.47
HMGA1-205ENST00000447654 TNFRSF17Q02223 184 aa17.99■□□□□ 0.47
HMGA1-205ENST00000447654 GANABQ14697 944 aaKnown RBP17.99■□□□□ 0.47
HMGA1-205ENST00000447654 TRAM2Q15035 370 aa17.99■□□□□ 0.47
HMGA1-205ENST00000447654 PTPRRQ15256 657 aa17.99■□□□□ 0.47
HMGA1-205ENST00000447654 CPSF6Q16630 551 aaKnown RBP eCLIP17.99■□□□□ 0.47
HMGA1-205ENST00000447654 TMEM44Q2T9K0 475 aa17.99■□□□□ 0.47
HMGA1-205ENST00000447654 ARSIQ5FYB1 569 aa17.99■□□□□ 0.47
HMGA1-205ENST00000447654 DCST1Q5T197 706 aa17.99■□□□□ 0.47
HMGA1-205ENST00000447654 OR52N2Q8NGI0 321 aa17.99■□□□□ 0.47
HMGA1-205ENST00000447654 OR10K1Q8NGX5 313 aa17.99■□□□□ 0.47
HMGA1-205ENST00000447654 CMSS1Q9BQ75 279 aaKnown RBP17.99■□□□□ 0.47
HMGA1-205ENST00000447654 ENTPD4Q9Y227 616 aa17.99■□□□□ 0.47
HMGA1-205ENST00000447654 ZNF840PA6NDX5 716 aa17.98■□□□□ 0.47
HMGA1-205ENST00000447654 H7C0S8 307 aa17.98■□□□□ 0.47
HMGA1-205ENST00000447654 COCHO43405 550 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms