RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 NINQ8N4C6 2090 aa14.49□□□□□ -0.09
USP40-206ENST00000443711 DSPP15924 2871 aaKnown RBP14.49□□□□□ -0.09
USP40-206ENST00000443711 MGAQ8IWI9 3026 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 PRORSD1PA6NEY8 169 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 SCDO00767 359 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 FADS1O60427 444 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 DPM1O60762 260 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 SLC25A12O75746 678 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 DNAJC8O75937 253 aaPredicted RBP14.48□□□□□ -0.09
USP40-206ENST00000443711 PDE9AO76083 593 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 ZIC2O95409 532 aaPredicted RBP14.48□□□□□ -0.09
USP40-206ENST00000443711 P04436 131 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 SP1P08047 785 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 SFTPCP11686 197 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 ETS2P15036 469 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 CD46P15529 392 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 TBXA2RP21731 343 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 DCTP40126 519 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 TNFSF10P50591 281 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 SNTA1Q13424 505 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 CEACAM7Q14002 265 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 ZNF141Q15928 474 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 RPS26P11Q5JNZ5 115 aaPredicted RBP14.48□□□□□ -0.09
USP40-206ENST00000443711 SLC25A25Q6KCM7 469 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 TMEM81Q6P7N7 255 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 ASB18Q6ZVZ8 466 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 MDGA2Q7Z553 956 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 YTHDF3Q7Z739 585 aaKnown RBP14.48□□□□□ -0.09
USP40-206ENST00000443711 PEX5LQ8IYB4 626 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 PSD4Q8NDX1 1056 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 CATSPER1Q8NEC5 780 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 ZNF607Q96SK3 696 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 LRMDAQ9H2I8 198 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 METTL7AQ9H8H3 244 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 CACYBPQ9HB71 228 aaKnown RBP14.48□□□□□ -0.09
USP40-206ENST00000443711 SH2D2AQ9NP31 389 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 GMPR2Q9P2T1 348 aaKnown RBP14.48□□□□□ -0.09
USP40-206ENST00000443711 SUCOQ9UBS9 1254 aaKnown RBP14.48□□□□□ -0.09
USP40-206ENST00000443711 PACSIN3Q9UKS6 424 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 CNOT11Q9UKZ1 510 aaKnown RBP14.48□□□□□ -0.09
USP40-206ENST00000443711 USP24Q9UPU5 2620 aa14.48□□□□□ -0.09
USP40-206ENST00000443711 DSPPQ9NZW4 1301 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 NPIPA5A0A0B4J1W7 369 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 TRAV17A0A0B4J275 112 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 ANKRD33BA6NCL7 494 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 PRAMEF25A6NGN4 478 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 NPIPA7E9PJI5 369 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 NPIPB9F8W1W9 429 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 K7EM74 188 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 ERVH48-1M5A8F1 160 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 GSC2O15499 205 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 GMNNO75496 209 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 SERPINB7O75635 380 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 OXSR1O95747 527 aaPredicted RBP14.47□□□□□ -0.09
USP40-206ENST00000443711 PDGFAP04085 211 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 DBIP07108 87 aaKnown RBP14.47□□□□□ -0.09
USP40-206ENST00000443711 NPIPA8P0DM63 369 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 CCL3P10147 92 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 TCN1P20061 433 aaPredicted RBP14.47□□□□□ -0.09
USP40-206ENST00000443711 CNR1P21554 472 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 ME2P23368 584 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 PGM1P36871 562 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 CASP3P42574 277 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 ZSCAN26Q16670 478 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 KLHL26Q53HC5 615 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 TBCELQ5QJ74 424 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 SLC30A6Q6NXT4 461 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 CCDC80Q76M96 950 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 PATL1Q86TB9 770 aaKnown RBP14.47□□□□□ -0.09
USP40-206ENST00000443711 FBXW8Q8N3Y1 598 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 GRHL3Q8TE85 626 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 MCUR1Q96AQ8 359 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 SPATA5L1Q9BVQ7 753 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 CADM1Q9BY67 442 aaKnown RBP14.47□□□□□ -0.09
USP40-206ENST00000443711 ANGPTL4Q9BY76 406 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 TBL1XR1Q9BZK7 514 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 KLRF1Q9NZS2 232 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 FLRT3Q9NZU0 649 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 ZNF232Q9UNY5 417 aa14.47□□□□□ -0.09
USP40-206ENST00000443711 KLF13Q9Y2Y9 288 aaPredicted RBP14.47□□□□□ -0.09
USP40-206ENST00000443711 A0A1W2PQD3 144 aa14.46□□□□□ -0.09
USP40-206ENST00000443711 AGAP5A6NIR3 686 aa14.46□□□□□ -0.09
USP40-206ENST00000443711 ALG1L2C9J202 215 aa14.46□□□□□ -0.09
USP40-206ENST00000443711 H3BNH8 94 aa14.46□□□□□ -0.09
USP40-206ENST00000443711 CXCR6O00574 342 aa14.46□□□□□ -0.09
USP40-206ENST00000443711 UGT2B17O75795 530 aa14.46□□□□□ -0.09
USP40-206ENST00000443711 IFNA14P01570 189 aa14.46□□□□□ -0.09
USP40-206ENST00000443711 IL7RP16871 459 aa14.46□□□□□ -0.09
USP40-206ENST00000443711 ENDOUP21128 410 aaKnown RBP14.46□□□□□ -0.09
USP40-206ENST00000443711 AQP1P29972 269 aa14.46□□□□□ -0.09
USP40-206ENST00000443711 EVI2BP34910 448 aa14.46□□□□□ -0.09
USP40-206ENST00000443711 PCBP3P57721 371 aaKnown RBP14.46□□□□□ -0.09
USP40-206ENST00000443711 BNIP2Q12982 314 aa14.46□□□□□ -0.09
USP40-206ENST00000443711 ZNF766Q5HY98 468 aa14.46□□□□□ -0.09
USP40-206ENST00000443711 PDZK1Q5T2W1 519 aa14.46□□□□□ -0.09
USP40-206ENST00000443711 ZNF614Q8N883 585 aa14.46□□□□□ -0.09
USP40-206ENST00000443711 EXD3Q8N9H8 876 aa14.46□□□□□ -0.09
USP40-206ENST00000443711 POGLUT1Q8NBL1 392 aa14.46□□□□□ -0.09
USP40-206ENST00000443711 TMEM178AQ8NBL3 297 aa14.46□□□□□ -0.09
USP40-206ENST00000443711 OR52P1PQ8NH57 321 aa14.46□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms