RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 GOLGA8OA6NCC3 632 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 FAM90A27PA6NNH2 459 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 GOLGA8NF8WBI6 632 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 KLF11O14901 512 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 EPPINO95925 133 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 NGFRP08138 427 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 COX6B1P14854 86 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 HPGDP15428 266 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 TCEA1P23193 301 aaKnown RBP13.8□□□□□ -0.2
LIMS3-201ENST00000437679 EPHA3P29320 983 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 LCN1P31025 176 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 C17orf67Q0P5P2 114 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 RCAN2Q14206 197 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 GANABQ14697 944 aaKnown RBP13.8□□□□□ -0.2
LIMS3-201ENST00000437679 CPEB4Q17RY0 729 aaKnown RBP eCLIP13.8□□□□□ -0.2
LIMS3-201ENST00000437679 ACSF3Q4G176 576 aaPredicted RBP13.8□□□□□ -0.2
LIMS3-201ENST00000437679 EXOSC6Q5RKV6 272 aaKnown RBP13.8□□□□□ -0.2
LIMS3-201ENST00000437679 DCST1Q5T197 706 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 CRYBG3Q68DQ2 2970 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 NXNQ6DKJ4 435 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 GALNT10Q86SR1 603 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 LACC1Q8IV20 430 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 CLECL1Q8IZS7 167 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 OR5AK3PQ8NH89 298 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 ZNF75CPQ92670 426 aaPredicted RBP13.8□□□□□ -0.2
LIMS3-201ENST00000437679 CDS1Q92903 461 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 TESCQ96BS2 214 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 WDR55Q9H6Y2 383 aaPredicted RBP13.8□□□□□ -0.2
LIMS3-201ENST00000437679 KCNJ16Q9NPI9 418 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 UBQLN4Q9NRR5 601 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 AIG1Q9NVV5 245 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 GPATCH2Q9NW75 528 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 MED11Q9P086 117 aa13.8□□□□□ -0.2
LIMS3-201ENST00000437679 INTS1Q8N201 2190 aaKnown RBP13.8□□□□□ -0.2
LIMS3-201ENST00000437679 A0A0G2JNJ9 132 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 PRSS51A0A1B0GVH4 220 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 HSPB2A8KAH6 182 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 C17orf51A8MQB3 221 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 ALG1L2C9J202 215 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 E9PBE3 544 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 ANKRD28O15084 1053 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 ZIC3O60481 467 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 CPSF4O95639 269 aaKnown RBP13.79□□□□□ -0.2
LIMS3-201ENST00000437679 OXSR1O95747 527 aaPredicted RBP13.79□□□□□ -0.2
LIMS3-201ENST00000437679 ANGPTL1O95841 491 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 SNRPB2P08579 225 aaKnown RBP13.79□□□□□ -0.2
LIMS3-201ENST00000437679 CPN1P15169 458 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 HK1P19367 917 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 ATP6V1C1P21283 382 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 TBXA2RP21731 343 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 CHMP24386 653 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 S100A3P33764 101 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 ADH7P40394 386 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 GFRA1P56159 465 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 WNT3P56703 355 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 HSPB2Q16082 182 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 TTMPQ5BVD1 217 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 CCNJQ5T5M9 372 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 OR4A15Q8NGL6 344 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 PIWIL2Q8TC59 973 aaKnown RBP13.79□□□□□ -0.2
LIMS3-201ENST00000437679 LRRC8CQ8TDW0 803 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 TRIB1Q96RU8 372 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 RTN4RQ9BZR6 473 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 UCK2Q9BZX2 261 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 VIPAS39Q9H9C1 493 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 Q9UFV3 132 aa13.79□□□□□ -0.2
LIMS3-201ENST00000437679 RPH3AQ9Y2J0 694 aaPredicted RBP13.79□□□□□ -0.2
LIMS3-201ENST00000437679 PCNX3Q9H6A9 2034 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 RNF103-CHMP3A0A140T963 221 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 NKX2-6A6NCS4 301 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 B4DXG7 233 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 H0Y3Z8 333 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 C19orf84I3L1E1 186 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 SCDO00767 359 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 NDUFB5O43674 189 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 ALDOCP09972 364 aaKnown RBP13.78□□□□□ -0.2
LIMS3-201ENST00000437679 H2AFXP16104 143 aaPredicted RBP13.78□□□□□ -0.2
LIMS3-201ENST00000437679 NME5P56597 212 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 UFM1P61960 85 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 SRYQ05066 204 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 FAM174BQ3ZCQ3 159 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 SPANXN4Q5MJ08 99 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 RAET1LQ5VY80 246 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 NSUN5P2Q63ZY6 315 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 APOOLQ6UXV4 268 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 C6orf120Q7Z4R8 191 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 ANKRD46Q86W74 232 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 MISPQ8IVT2 679 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 OR4C3Q8NH37 302 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 ZPLD1Q8TCW7 415 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 SLC35G5Q96KT7 338 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 OR7D2Q96RA2 312 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 ZBTB18Q99592 522 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 SH3GL2Q99962 352 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 FBXO34Q9NWN3 711 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 ITPR2Q14571 2701 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 CELSR2Q9HCU4 2923 aa13.78□□□□□ -0.2
LIMS3-201ENST00000437679 IGLV3-32A0A0A0MS00 114 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 CD8B2A6NJW9 211 aa13.77□□□□□ -0.21
LIMS3-201ENST00000437679 DUXAA6NLW8 204 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms