RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 SLC22A11Q9NSA0 550 aa19.58■□□□□ 0.72
PTPRF-207ENST00000436724 KLHL28Q9NXS3 571 aa19.58■□□□□ 0.72
PTPRF-207ENST00000436724 IGKV3D-11A0A0A0MRZ8 115 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 A0A1W2PRQ8 180 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 BCAS1O75363 584 aaPredicted RBP19.57■□□□□ 0.72
PTPRF-207ENST00000436724 CT45A8P0DMV1 189 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 CT45A9P0DMV2 189 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 RPS4Y1P22090 263 aaKnown RBP19.57■□□□□ 0.72
PTPRF-207ENST00000436724 RYKP34925 604 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 TAS2R41P59536 307 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 RHAGQ02094 409 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 IL18R1Q13478 541 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 DGCR6Q14129 220 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 CT45A2Q5DJT8 189 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 PWWP2BQ6NUJ5 590 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 KLHL17Q6TDP4 642 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 LHPPQ9H008 270 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 APMAPQ9HDC9 416 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 MMACHCQ9Y4U1 282 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 SH3PXD2BA1X283 911 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 E9PQ18 207 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 HTR1AP08908 422 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 CDK5R2Q13319 367 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 MRPL2Q5T653 305 aaKnown RBP19.57■□□□□ 0.72
PTPRF-207ENST00000436724 LAIR1Q6GTX8 287 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 RHBDD2Q6NTF9 364 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 QSOX2Q6ZRP7 698 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 B3GNT8Q7Z7M8 397 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 AMER2Q8N7J2 671 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 HRASLS5Q96KN8 279 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 GFM1Q96RP9 751 aaKnown RBP19.57■□□□□ 0.72
PTPRF-207ENST00000436724 ITPAQ9BY32 194 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 TRIM45Q9H8W5 580 aaPredicted RBP19.57■□□□□ 0.72
PTPRF-207ENST00000436724 CACYBPQ9HB71 228 aaKnown RBP19.57■□□□□ 0.72
PTPRF-207ENST00000436724 RASSF1Q9NS23 344 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 SEMA4GQ9NTN9 838 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 MKL2Q9ULH7 1088 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 PCDHGA6Q9Y5G7 932 aa19.57■□□□□ 0.72
PTPRF-207ENST00000436724 ARRDC5A6NEK1 342 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 AK1P00568 194 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 PRG2P13727 222 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 TMBIM6P55061 237 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 NSDHLQ15738 373 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 FLYWCH1Q4VC44 716 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 ENTPD8Q5MY95 495 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 COX15Q7KZN9 410 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 DRAXINQ8NBI3 349 aaPredicted RBP19.56■□□□□ 0.72
PTPRF-207ENST00000436724 OR8D2Q9GZM6 311 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 OCIAD1Q9NX40 245 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 R4GN57 208 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 FAAHO00519 579 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 DBIP07108 87 aaKnown RBP19.56■□□□□ 0.72
PTPRF-207ENST00000436724 THBS1P07996 1170 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 CCNYL3P0C7X3 344 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 GKN3PP0CG01 181 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 NID1P14543 1247 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 PIGFQ07326 219 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 TUBA3CQ13748 450 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 YOD1Q5VVQ6 348 aaPredicted RBP19.56■□□□□ 0.72
PTPRF-207ENST00000436724 GTF2IRD2BQ6EKJ0 949 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 PGBD2Q6P3X8 592 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 MED25Q71SY5 747 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 GTF2IRD2Q86UP8 949 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 ZNF614Q8N883 585 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 TBC1D15Q8TC07 691 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 FBLIM1Q8WUP2 373 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 DIO2Q92813 273 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 LMF1Q96S06 567 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 PITX2Q99697 317 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 MCHR1Q99705 422 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 VN1R1Q9GZP7 353 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 GALNT8Q9NY28 637 aa19.56■□□□□ 0.72
PTPRF-207ENST00000436724 hCG_2014768A0A024R1R8 64 aa19.55■□□□□ 0.72
PTPRF-207ENST00000436724 XPNPEP2O43895 674 aa19.55■□□□□ 0.72
PTPRF-207ENST00000436724 SCRG1O75711 98 aa19.55■□□□□ 0.72
PTPRF-207ENST00000436724 FMO3P31513 532 aa19.55■□□□□ 0.72
PTPRF-207ENST00000436724 SMIM11AP58511 58 aa19.55■□□□□ 0.72
PTPRF-207ENST00000436724 PLAURQ03405 335 aa19.55■□□□□ 0.72
PTPRF-207ENST00000436724 MEX3DQ86XN8 651 aaKnown RBP19.55■□□□□ 0.72
PTPRF-207ENST00000436724 SLITRK4Q8IW52 837 aa19.55■□□□□ 0.72
PTPRF-207ENST00000436724 SETD9Q8NE22 299 aa19.55■□□□□ 0.72
PTPRF-207ENST00000436724 BPIFB6Q8NFQ5 453 aa19.55■□□□□ 0.72
PTPRF-207ENST00000436724 OR4K5Q8NGD3 323 aa19.55■□□□□ 0.72
PTPRF-207ENST00000436724 ZNF578Q96N58 590 aaPredicted RBP19.55■□□□□ 0.72
PTPRF-207ENST00000436724 APOL4Q9BPW4 351 aa19.55■□□□□ 0.72
PTPRF-207ENST00000436724 PELOQ9BRX2 385 aaKnown RBP19.55■□□□□ 0.72
PTPRF-207ENST00000436724 SIDT1Q9NXL6 827 aaKnown RBP19.55■□□□□ 0.72
PTPRF-207ENST00000436724 RARRES3Q9UL19 164 aa19.55■□□□□ 0.72
PTPRF-207ENST00000436724 SRPK3Q9UPE1 567 aa19.55■□□□□ 0.72
PTPRF-207ENST00000436724 CLCA3PQ9Y6N3 262 aa19.55■□□□□ 0.72
PTPRF-207ENST00000436724 NUP210LQ5VU65 1888 aa19.55■□□□□ 0.72
PTPRF-207ENST00000436724 THY1P04216 161 aa19.54■□□□□ 0.72
PTPRF-207ENST00000436724 IGFBP1P08833 259 aaPredicted RBP19.54■□□□□ 0.72
PTPRF-207ENST00000436724 ZNF136P52737 540 aa19.54■□□□□ 0.72
PTPRF-207ENST00000436724 NFATC3Q12968 1075 aa19.54■□□□□ 0.72
PTPRF-207ENST00000436724 TARDBPQ13148 414 aaKnown RBP eCLIP19.54■□□□□ 0.723e-6■■■■□ 20.1
PTPRF-207ENST00000436724 SMN1Q16637 294 aaKnown RBP19.54■□□□□ 0.72
PTPRF-207ENST00000436724 PDZK1Q5T2W1 519 aa19.54■□□□□ 0.72
PTPRF-207ENST00000436724 TMEM236Q5W0B7 351 aa19.54■□□□□ 0.72
PTPRF-207ENST00000436724 FAAH2Q6GMR7 532 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms