RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 ETFAP13804 333 aa11.35□□□□□ -0.59
USP40-205ENST00000430158 TBXA2RP21731 343 aa11.35□□□□□ -0.59
USP40-205ENST00000430158 IL12BP29460 328 aa11.35□□□□□ -0.59
USP40-205ENST00000430158 EVI2BP34910 448 aa11.35□□□□□ -0.59
USP40-205ENST00000430158 RFC3P40938 356 aa11.35□□□□□ -0.59
USP40-205ENST00000430158 KHKP50053 298 aa11.35□□□□□ -0.59
USP40-205ENST00000430158 CYLC2Q14093 348 aaPredicted RBP11.35□□□□□ -0.59
USP40-205ENST00000430158 MAPRE2Q15555 327 aa11.35□□□□□ -0.59
USP40-205ENST00000430158 KLHL26Q53HC5 615 aa11.35□□□□□ -0.59
USP40-205ENST00000430158 TBCELQ5QJ74 424 aa11.35□□□□□ -0.59
USP40-205ENST00000430158 ZNF787Q6DD87 383 aa11.35□□□□□ -0.59
USP40-205ENST00000430158 C8orf82Q6P1X6 216 aaPredicted RBP11.35□□□□□ -0.59
USP40-205ENST00000430158 FRRS1Q6ZNA5 592 aa11.35□□□□□ -0.59
USP40-205ENST00000430158 CHERPQ8IWX8 916 aaKnown RBP11.35□□□□□ -0.59
USP40-205ENST00000430158 ANKFN1Q8N957 763 aa11.35□□□□□ -0.59
USP40-205ENST00000430158 XAGE5Q8WWM1 108 aa11.35□□□□□ -0.59
USP40-205ENST00000430158 MIB2Q96AX9 1013 aa11.35□□□□□ -0.59
USP40-205ENST00000430158 ROPN1LQ96C74 230 aa11.35□□□□□ -0.59
USP40-205ENST00000430158 ZG16BQ96DA0 208 aa11.35□□□□□ -0.59
USP40-205ENST00000430158 TMCO6Q96DC7 493 aa11.35□□□□□ -0.59
USP40-205ENST00000430158 TMEM41AQ96HV5 264 aa11.35□□□□□ -0.59
USP40-205ENST00000430158 GPATCH1Q9BRR8 931 aaKnown RBP11.35□□□□□ -0.59
USP40-205ENST00000430158 RSPO3Q9BXY4 272 aaPredicted RBP11.35□□□□□ -0.59
USP40-205ENST00000430158 TRIM8Q9BZR9 551 aa11.35□□□□□ -0.59
USP40-205ENST00000430158 UBQLN3Q9H347 655 aa11.35□□□□□ -0.59
USP40-205ENST00000430158 MRTO4Q9UKD2 239 aaKnown RBP11.35□□□□□ -0.59
USP40-205ENST00000430158 ABCG2Q9UNQ0 655 aa11.35□□□□□ -0.59
USP40-205ENST00000430158 PCDHGB3Q9Y5G1 929 aa11.35□□□□□ -0.59
USP40-205ENST00000430158 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.35□□□□□ -0.59
USP40-205ENST00000430158 SPTBN1Q01082 2364 aaKnown RBP11.35□□□□□ -0.59
USP40-205ENST00000430158 UBR5O95071 2799 aaPredicted RBP11.34□□□□□ -0.59
USP40-205ENST00000430158 LRRK2Q5S007 2527 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 IGLV3-32A0A0A0MS00 114 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 MRASO14807 208 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 OXSR1O95747 527 aaPredicted RBP11.34□□□□□ -0.59
USP40-205ENST00000430158 NPPAP01160 153 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 CHRM4P08173 479 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 PRDX6P30041 224 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 KRT20P35900 424 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 PSMD4P55036 377 aaKnown RBP11.34□□□□□ -0.59
USP40-205ENST00000430158 RPP38P78345 283 aaKnown RBP11.34□□□□□ -0.59
USP40-205ENST00000430158 PLAURQ03405 335 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 FADDQ13158 208 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 STX5Q13190 355 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 NFYCQ13952 458 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 ZNF141Q15928 474 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 MAPK14Q16539 360 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 SYPL1Q16563 259 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 TRMT5Q32P41 509 aaKnown RBP11.34□□□□□ -0.59
USP40-205ENST00000430158 CMPK2Q5EBM0 449 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 GKAP1Q5VSY0 366 aaPredicted RBP11.34□□□□□ -0.59
USP40-205ENST00000430158 TIGD3Q6B0B8 471 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 TYW3Q6IPR3 259 aaKnown RBP11.34□□□□□ -0.59
USP40-205ENST00000430158 NANOGP8Q6NSW7 305 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 TMEM251Q8N6I4 163 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 FITM2Q8N6M3 262 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 CPT1CQ8TCG5 803 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 SLC38A5Q8WUX1 472 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 NR4A3Q92570 626 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 LRRC58Q96CX6 371 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 RCN3Q96D15 328 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 TRNT1Q96Q11 434 aaKnown RBP11.34□□□□□ -0.59
USP40-205ENST00000430158 SLC39A3Q9BRY0 314 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 DOHHQ9BU89 302 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 G6PC3Q9BUM1 346 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 OSBPL11Q9BXB4 747 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 TTTY12Q9BZ98 90 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 SLC38A1Q9H2H9 487 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 RUBCNLQ9H714 662 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 ZDHHC11Q9H8X9 412 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 NANOGQ9H9S0 305 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 ZFP64Q9NPA5 681 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 POLE3Q9NRF9 147 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 UBQLN4Q9NRR5 601 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 LIPT1Q9Y234 373 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 DSPPQ9NZW4 1301 aa11.34□□□□□ -0.59
USP40-205ENST00000430158 RELNP78509 3460 aa11.33□□□□□ -0.6
USP40-205ENST00000430158 NPIPA5A0A0B4J1W7 369 aa11.33□□□□□ -0.6
USP40-205ENST00000430158 A0A1W2PQD3 144 aa11.33□□□□□ -0.6
USP40-205ENST00000430158 NPIPA7E9PJI5 369 aa11.33□□□□□ -0.6
USP40-205ENST00000430158 KIAA0513O60268 411 aa11.33□□□□□ -0.6
USP40-205ENST00000430158 STX11O75558 287 aa11.33□□□□□ -0.6
USP40-205ENST00000430158 NPIPA8P0DM63 369 aa11.33□□□□□ -0.6
USP40-205ENST00000430158 RPS4Y1P22090 263 aaKnown RBP11.33□□□□□ -0.6
USP40-205ENST00000430158 PPIBP23284 216 aaKnown RBP11.33□□□□□ -0.6
USP40-205ENST00000430158 SLC6A2P23975 617 aa11.33□□□□□ -0.6
USP40-205ENST00000430158 RFX3P48380 749 aa11.33□□□□□ -0.6
USP40-205ENST00000430158 ATP12AP54707 1039 aa11.33□□□□□ -0.6
USP40-205ENST00000430158 DSTNP60981 165 aa11.33□□□□□ -0.6
USP40-205ENST00000430158 TLE1Q04724 770 aa11.33□□□□□ -0.6
USP40-205ENST00000430158 CHRNEQ04844 493 aa11.33□□□□□ -0.6
USP40-205ENST00000430158 CAPRIN1Q14444 709 aaKnown RBP11.33□□□□□ -0.6
USP40-205ENST00000430158 CD226Q15762 336 aa11.33□□□□□ -0.6
USP40-205ENST00000430158 HACD2Q6Y1H2 254 aa11.33□□□□□ -0.6
USP40-205ENST00000430158 LRRC74BQ6ZQY2 392 aa11.33□□□□□ -0.6
USP40-205ENST00000430158 NET1Q7Z628 596 aaPredicted RBP11.33□□□□□ -0.6
USP40-205ENST00000430158 MARCH3Q86UD3 253 aa11.33□□□□□ -0.6
USP40-205ENST00000430158 CALHM3Q86XJ0 350 aa11.33□□□□□ -0.6
USP40-205ENST00000430158 PTOV1Q86YD1 416 aa11.33□□□□□ -0.6
USP40-205ENST00000430158 FADS6Q8N9I5 356 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms