RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 IFT74Q96LB3 600 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 NSMCE3Q96MG7 304 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 SPATA13Q96N96 652 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 LGMNQ99538 433 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 NFKBIZQ9BYH8 718 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 SHCBP1LQ9BZQ2 653 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 NMNAT2Q9BZQ4 307 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 NDEL1Q9GZM8 345 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 RAB17Q9H0T7 212 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 DPH5Q9H2P9 285 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 C5orf66Q9H5L9 145 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 ECT2Q9H8V3 914 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 MARCH7Q9H992 704 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 NGBQ9NPG2 151 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 SLC35D1Q9NTN3 355 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 BARHL2Q9NY43 387 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 ANKMY1Q9P2S6 941 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 EXTL2Q9UBQ6 330 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 FBXL4Q9UKA2 621 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 PILRBQ9UKJ0 227 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 MMP17Q9ULZ9 603 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 PPP2R2CQ9Y2T4 447 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 HES2Q9Y543 173 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 SPAG17Q6Q759 2223 aa3.64□□□□□ -1.83
HMGB3-203ENST00000430118 MYH9P35579 1960 aaKnown RBP3.63□□□□□ -1.83
HMGB3-203ENST00000430118 KALRNO60229 2985 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 AKAP13Q12802 2813 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 TSC2P49815 1807 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 ARID2Q68CP9 1835 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 NUP210Q8TEM1 1887 aaPredicted RBP3.63□□□□□ -1.83
HMGB3-203ENST00000430118 PVALEFA0A1B0GWK0 134 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 ESYT2A0FGR8 921 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 TRABD2BA6NFA1 517 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 DNAJC9-AS1A6NH13 148 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 SYCE1LA8MT33 242 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.63□□□□□ -1.83
HMGB3-203ENST00000430118 E9PBE3 544 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 AP3B1O00203 1094 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 IKBKBO14920 756 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 CETN3O15182 167 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 SLC22A1O15245 554 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 PSMD3O43242 534 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 SMPD2O60906 423 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 PEX11AO75192 247 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 CDK2AP2O75956 126 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 PDE5AO76074 875 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 PLEKHA8P1O95397 391 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 GNA14O95837 355 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 KRT8P05787 483 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 APRTP07741 180 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 ZNF883P0CG24 379 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 CT45A8P0DMV1 189 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 CT45A9P0DMV2 189 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 NQO1P15559 274 aaKnown RBP3.63□□□□□ -1.83
HMGB3-203ENST00000430118 MSH3P20585 1137 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 ITGA3P26006 1051 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 RPA1P27694 616 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 GABRR2P28476 465 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 MARCKSP29966 332 aaPredicted RBP3.63□□□□□ -1.83
HMGB3-203ENST00000430118 SRD5A2P31213 254 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 P2RY2P41231 377 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 CCR2P41597 374 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 MATKP42679 507 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 ALDH3B1P43353 468 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 QARSP47897 775 aaKnown RBP3.63□□□□□ -1.83
HMGB3-203ENST00000430118 SLC6A12P48065 614 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 IFNAR2P48551 515 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 TMED10P49755 219 aaKnown RBP3.63□□□□□ -1.83
HMGB3-203ENST00000430118 TNFSF10P50591 281 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 NR0B1P51843 470 aaKnown RBP3.63□□□□□ -1.83
HMGB3-203ENST00000430118 HMGA2P52926 109 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 GAS1P54826 345 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 RIPPLY3P57055 190 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 RPL26P61254 145 aaKnown RBP3.63□□□□□ -1.83
HMGB3-203ENST00000430118 GNG11P61952 73 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 MRPS21P82921 87 aaKnown RBP3.63□□□□□ -1.83
HMGB3-203ENST00000430118 RELAQ04206 551 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 PDZK1IP1Q13113 114 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 SRSF9Q13242 221 aaKnown RBP eCLIP3.63□□□□□ -1.83
HMGB3-203ENST00000430118 HERC3Q15034 1050 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 KRT71Q3SY84 523 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 LIN52Q52LA3 116 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 CT45A2Q5DJT8 189 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 STXBP5Q5T5C0 1151 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 OR6B2Q6IFH4 312 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 ZNF425Q6IV72 752 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 ARSKQ6UWY0 536 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 CDHR3Q6ZTQ4 885 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 ANO5Q75V66 913 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 EID3Q8N140 333 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 BBS5Q8N3I7 341 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 EIF1ADQ8N9N8 165 aaKnown RBP3.63□□□□□ -1.83
HMGB3-203ENST00000430118 OR7G1Q8NGA0 311 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 FBXO30Q8TB52 745 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 SPATA18Q8TC71 538 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 GANCQ8TET4 914 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 AENQ8WTP8 325 aaKnown RBP3.63□□□□□ -1.83
HMGB3-203ENST00000430118 PSMG2Q969U7 264 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 FAM46BQ96A09 425 aa3.63□□□□□ -1.83
HMGB3-203ENST00000430118 RFT1Q96AA3 541 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms