RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 ARPP19P56211 112 aa4.82□□□□□ -1.64
RIF1-203ENST00000428287 ACSM2AQ08AH3 577 aa4.82□□□□□ -1.64
RIF1-203ENST00000428287 UBXN2BQ14CS0 331 aa4.82□□□□□ -1.64
RIF1-203ENST00000428287 TRAM1Q15629 374 aa4.82□□□□□ -1.64
RIF1-203ENST00000428287 SMAD2Q15796 467 aaKnown RBP4.82□□□□□ -1.64
RIF1-203ENST00000428287 FAM209BQ5JX69 171 aa4.82□□□□□ -1.64
RIF1-203ENST00000428287 ACSM2BQ68CK6 577 aa4.82□□□□□ -1.64
RIF1-203ENST00000428287 NUDT18Q6ZVK8 323 aa4.82□□□□□ -1.64
RIF1-203ENST00000428287 THAP4Q8WY91 577 aa4.82□□□□□ -1.64
RIF1-203ENST00000428287 BBS4Q96RK4 519 aa4.82□□□□□ -1.64
RIF1-203ENST00000428287 MRI1Q9BV20 369 aa4.82□□□□□ -1.64
RIF1-203ENST00000428287 CINPQ9BW66 212 aaPredicted RBP4.82□□□□□ -1.64
RIF1-203ENST00000428287 SEMA3GQ9NS98 782 aa4.82□□□□□ -1.64
RIF1-203ENST00000428287 NLGN3Q9NZ94 848 aa4.82□□□□□ -1.64
RIF1-203ENST00000428287 SCAMP2O15127 329 aaKnown RBP4.81□□□□□ -1.64
RIF1-203ENST00000428287 KLHL18O94889 574 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 S100PP25815 95 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 CFPP27918 469 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 TIA1P31483 386 aaKnown RBP eCLIP4.81□□□□□ -1.642e-6■■■□□ 17.7
RIF1-203ENST00000428287 ACVRL1P37023 503 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 BLVRAP53004 296 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 RPS25P62851 125 aaKnown RBP4.81□□□□□ -1.64
RIF1-203ENST00000428287 TAP2Q03519 686 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 KIAA1161Q6NSJ0 714 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 SLC36A1Q7Z2H8 476 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 SLC9B2Q86UD5 537 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 TTYH1Q9H313 450 aaPredicted RBP4.81□□□□□ -1.64
RIF1-203ENST00000428287 NFKBIL1Q9UBC1 381 aaPredicted RBP4.81□□□□□ -1.64
RIF1-203ENST00000428287 LINC00587B1AMM8 73 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 TO15178 435 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 MGMTP16455 207 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 H2BFSP57053 126 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 PAN3Q58A45 887 aaKnown RBP4.81□□□□□ -1.64
RIF1-203ENST00000428287 DCST1Q5T197 706 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 MZT2AQ6P582 158 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 FBXO16Q8IX29 292 aaPredicted RBP4.81□□□□□ -1.64
RIF1-203ENST00000428287 BEST4Q8NFU0 473 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 OR51M1Q9H341 326 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 HAO2Q9NYQ3 351 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 WWOXQ9NZC7 414 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 ENTPD4Q9Y227 616 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 EXOGQ9Y2C4 368 aaKnown RBP4.81□□□□□ -1.64
RIF1-203ENST00000428287 TRAV6A0A075B6T7 132 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 GJB3O75712 270 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 SLCO2B1O94956 709 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 RLN2P04090 185 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 ITGB8P26012 769 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 HTR1FP30939 366 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 CCR7P32248 378 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 TBX4P57082 545 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 TSPAN5P62079 268 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 RAE1P78406 368 aaKnown RBP4.81□□□□□ -1.64
RIF1-203ENST00000428287 RPL6Q02878 288 aaKnown RBP4.81□□□□□ -1.64
RIF1-203ENST00000428287 SLC38A3Q99624 504 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 CTPS2Q9NRF8 586 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 ENAMQ9NRM1 1142 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 OR6C2Q9NZP2 312 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 MARCH2Q9P0N8 246 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 MBD2Q9UBB5 411 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 A0A087WUU8 490 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 RNF222A6NCQ9 220 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 TMEM189-UBE2V1I3L0A0 370 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 CXCL11O14625 94 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 LRRTM2O43300 516 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 EFCAB14O75071 495 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 TRBC1P01850 177 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 TFP02787 698 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 FOLR2P14207 255 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 POU2F1P14859 743 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 POU3F2P20265 443 aaPredicted RBP4.81□□□□□ -1.64
RIF1-203ENST00000428287 CRYBB1P53674 252 aaPredicted RBP4.81□□□□□ -1.64
RIF1-203ENST00000428287 FOXD4Q12950 439 aaPredicted RBP4.81□□□□□ -1.64
RIF1-203ENST00000428287 ZNF783Q6ZMS7 281 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 OR4K5Q8NGD3 323 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 SUSD3Q96L08 255 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 SLC25A32Q9H2D1 315 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 ANKRD19PQ9H560 264 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 REEP4Q9H6H4 257 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 FANCFQ9NPI8 374 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 PPP1R14DQ9NXH3 145 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 BABAM2Q9NXR7 383 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 PFDN2Q9UHV9 154 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 RASD1Q9Y272 281 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 CARHSP1Q9Y2V2 147 aaKnown RBP4.81□□□□□ -1.64
RIF1-203ENST00000428287 NUPL2O15504 423 aaKnown RBP4.81□□□□□ -1.64
RIF1-203ENST00000428287 REM1O75628 298 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 UBXN7O94888 489 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 IFNGP01579 166 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 ANKRD34CP0C6C1 535 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 GSTM3P21266 225 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 CTSCP53634 463 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 PNLIPRP1P54315 467 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 PRMT2P55345 433 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 SSTP61278 116 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 ZNF345Q14585 488 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 RNF212Q495C1 297 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 FAM26DQ5JW98 314 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 FAM27D1Q5T7N8 215 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 LYPLAL1Q5VWZ2 237 aa4.81□□□□□ -1.64
RIF1-203ENST00000428287 SFXN4Q6P4A7 337 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms