RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 ZNF691Q5VV52 312 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 MED27Q6P2C8 311 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 C11orf88Q6PI97 169 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 SYT13Q7L8C5 426 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 HSD17B13Q7Z5P4 300 aaPredicted RBP9.24□□□□□ -0.93
USP54-205ENST00000424265 CEP97Q8IW35 865 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 SLC35F3Q8IY50 421 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 APOOQ9BUR5 198 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 SLC32A1Q9H598 525 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 SOHLH2Q9NX45 425 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 MRTO4Q9UKD2 239 aaKnown RBP9.24□□□□□ -0.93
USP54-205ENST00000424265 MRPS33Q9Y291 106 aaKnown RBP9.24□□□□□ -0.93
USP54-205ENST00000424265 TCRBV16S1A1N1A0A5B0 115 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 HMX2A2RU54 273 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 PNPP00491 289 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 CFIP05156 583 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 DPTQ07507 201 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 HYAL2Q12891 473 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 KCNAB1Q14722 419 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 FAM122BQ7Z309 247 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 B3GNT8Q7Z7M8 397 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 RNF130Q86XS8 419 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 OR9A1PQ8NGU1 263 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 ADAMTS19Q8TE59 1207 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 S1PR5Q9H228 398 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 TREM1Q9NP99 234 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 MIEF1Q9NQG6 463 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 OXSMQ9NWU1 459 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 CLEC1BQ9P126 229 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 KCNK7Q9Y2U2 307 aa9.24□□□□□ -0.93
USP54-205ENST00000424265 TRIP11Q15643 1979 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 HSBP1L1C9JCN9 74 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 OR10H2O60403 315 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 SEC22BO75396 215 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 PCMT1P22061 227 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 C1DQ13901 141 aaKnown RBP9.23□□□□□ -0.93
USP54-205ENST00000424265 VPS26BQ4G0F5 336 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 SLC30A6Q6NXT4 461 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 TSPAN33Q86UF1 283 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 SLAMF9Q96A28 289 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 CCDC115Q96NT0 180 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 GULP1Q9UBP9 304 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 A0A075B6Q4 140 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 ANHXE9PGG2 379 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 HTR2AP28223 471 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 HOXC5Q00444 222 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 CLINT1Q14677 625 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 SF3A2Q15428 464 aaKnown RBP9.23□□□□□ -0.93
USP54-205ENST00000424265 LYSMD4Q5XG99 296 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 PSAPL1Q6NUJ1 521 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 TET1Q8NFU7 2136 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 METTL8Q9H825 291 aaKnown RBP9.23□□□□□ -0.93
USP54-205ENST00000424265 EVA1AQ9H8M9 152 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 GPR160Q9UJ42 338 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 PPIL1Q9Y3C6 166 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 OARD1Q9Y530 152 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 LRIT2A6NDA9 550 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 GPR171O14626 319 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 TNFRSF10CO14798 259 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 PEPDP12955 493 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 SF1Q15637 639 aaKnown RBP9.23□□□□□ -0.93
USP54-205ENST00000424265 CTU2Q2VPK5 515 aaKnown RBP9.23□□□□□ -0.93
USP54-205ENST00000424265 HEPHL1Q6MZM0 1159 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 MCATQ8IVS2 390 aaKnown RBP9.23□□□□□ -0.93
USP54-205ENST00000424265 UXS1Q8NBZ7 420 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 SFXN2Q96NB2 322 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 SORCS2Q96PQ0 1159 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 SLC30A3Q99726 388 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 SRRQ9GZT4 340 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 OR51J1Q9H342 316 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 IPPKQ9H8X2 491 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 RFPL4AA6NLU0 287 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 TMEM210A6NLX4 147 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 MARCH11A6NNE9 402 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 PRRT4C9JH25 899 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 NPIPA7E9PJI5 369 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 RFPL4AL1F8VTS6 287 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 PRAMEF2O60811 474 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 NPIPA8P0DM63 369 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 LIPAP38571 399 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 STXBP1P61764 594 aaKnown RBP9.23□□□□□ -0.93
USP54-205ENST00000424265 SSPNQ14714 243 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 NFATC4Q14934 902 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 RNF151Q2KHN1 245 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 DPY19L1Q2PZI1 675 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 SAXO2Q658L1 398 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 HSD11B1LQ7Z5J1 315 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 LAX1Q8IWV1 398 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 GPR135Q8IZ08 494 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 NLGN4YQ8NFZ3 816 aaPredicted RBP9.23□□□□□ -0.93
USP54-205ENST00000424265 OR2L8Q8NGY9 312 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 ACOT11Q8WXI4 607 aaPredicted RBP9.23□□□□□ -0.93
USP54-205ENST00000424265 ECHDC3Q96DC8 303 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 ALG14Q96F25 216 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 SAP130Q9H0E3 1048 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 ZDHHC2Q9UIJ5 367 aa9.23□□□□□ -0.93
USP54-205ENST00000424265 YARS2Q9Y2Z4 477 aaKnown RBP9.23□□□□□ -0.93
USP54-205ENST00000424265 OAS3Q9Y6K5 1087 aaKnown RBP9.23□□□□□ -0.93
USP54-205ENST00000424265 OR2A25A4D2G3 310 aa9.22□□□□□ -0.93
USP54-205ENST00000424265 LRRC14BA6NHZ5 514 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms