RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 A0A0J9YW62 118 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 HS3ST1O14792 307 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 ZNF500O60304 480 aaPredicted RBP7.24□□□□□ -1.25
VIM-202ENST00000421459 SOX30O94993 753 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 PSMG1O95456 288 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 PLGP00747 810 aaPredicted RBP7.24□□□□□ -1.25
VIM-202ENST00000421459 KRT6AP02538 564 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 KRT6BP04259 564 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 SOD3P08294 240 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 COL6A2P12110 1019 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 DDCP20711 480 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 PTNP21246 168 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 GCAP28676 217 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 SHC1P29353 583 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 HMOX2P30519 316 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 CDKN1AP38936 164 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 KRT6CP48668 564 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 RASA2Q15283 850 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 DECR1Q16698 335 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 BEX5Q5H9J7 111 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 FAM71E1Q6IPT2 247 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 ZNF551Q7Z340 670 aaPredicted RBP7.24□□□□□ -1.25
VIM-202ENST00000421459 NUFIP2Q7Z417 695 aaKnown RBP7.24□□□□□ -1.25
VIM-202ENST00000421459 LSRQ86X29 649 aaPredicted RBP7.24□□□□□ -1.25
VIM-202ENST00000421459 OR2L13Q8N349 312 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 GBP7Q8N8V2 638 aaPredicted RBP7.24□□□□□ -1.25
VIM-202ENST00000421459 OR6K3Q8NGY3 331 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 OR4C3Q8NH37 302 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 SPATA3Q8NHX4 192 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 PUM2Q8TB72 1066 aaKnown RBP eCLIP7.24□□□□□ -1.25
VIM-202ENST00000421459 POC1BQ8TC44 478 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 IFT81Q8WYA0 676 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 GFM2Q969S9 779 aaKnown RBP7.24□□□□□ -1.25
VIM-202ENST00000421459 ELP4Q96EB1 424 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 SH3YL1Q96HL8 342 aaPredicted RBP7.24□□□□□ -1.25
VIM-202ENST00000421459 ADGRG7Q96K78 797 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 EGLN2Q96KS0 407 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 AMDHD1Q96NU7 426 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 ZNF382Q96SR6 550 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 TMEM204Q9BSN7 226 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 FUT8Q9BYC5 575 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 TBL1XR1Q9BZK7 514 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 SHCBP1LQ9BZQ2 653 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 ACTR6Q9GZN1 396 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 PTGES2Q9H7Z7 377 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 SDHAF3Q9NRP4 125 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 DDX18Q9NVP1 670 aaKnown RBP7.24□□□□□ -1.25
VIM-202ENST00000421459 FAM120CQ9NX05 1096 aaKnown RBP7.24□□□□□ -1.25
VIM-202ENST00000421459 AP4B1Q9Y6B7 739 aa7.24□□□□□ -1.25
VIM-202ENST00000421459 A0A087WV62 115 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 UQCRHLA0A096LP55 91 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 A0A1W2PRB8 838 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 GOLGA8RI6L899 631 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 CLOCKO15516 846 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 EFNA2O43921 213 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 SS18L1O75177 396 aaPredicted RBP7.23□□□□□ -1.25
VIM-202ENST00000421459 COQ9O75208 318 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 HSD3B1P14060 373 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 PAX1P15863 534 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 EFNA1P20827 205 aaPredicted RBP7.23□□□□□ -1.25
VIM-202ENST00000421459 IMPDH1P20839 514 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 HSD3B2P26439 372 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 ECHS1P30084 290 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 ACVR1BP36896 505 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 CLK3P49761 638 aaKnown RBP7.23□□□□□ -1.25
VIM-202ENST00000421459 SERPINB9P50453 376 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 PRKAG1P54619 331 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 CTBP2P56545 445 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 RPS3AP61247 264 aaKnown RBP7.23□□□□□ -1.25
VIM-202ENST00000421459 MRPS22P82650 360 aaKnown RBP7.23□□□□□ -1.25
VIM-202ENST00000421459 C17orf67Q0P5P2 114 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 FAPQ12884 760 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 HSPB3Q12988 150 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 VEZF1Q14119 521 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 GANABQ14697 944 aaKnown RBP7.23□□□□□ -1.25
VIM-202ENST00000421459 CLEC12BQ2HXU8 276 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 ZNF385BQ569K4 471 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 SPIN4Q56A73 249 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 HMBOX1Q6NT76 420 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 C8orf74Q6P047 294 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 GALNT18Q6P9A2 607 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 FIGNL1Q6PIW4 674 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 ZNF572Q7Z3I7 529 aaPredicted RBP7.23□□□□□ -1.25
VIM-202ENST00000421459 SAMD14Q8IZD0 417 aaPredicted RBP7.23□□□□□ -1.25
VIM-202ENST00000421459 ZNF611Q8N823 705 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 GPR151Q8TDV0 419 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 OSTF1Q92882 214 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 CIDECQ96AQ7 238 aaPredicted RBP7.23□□□□□ -1.25
VIM-202ENST00000421459 S100PBPQ96BU1 408 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 ZNF524Q96C55 264 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 C16orf58Q96GQ5 468 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 GMPPAQ96IJ6 420 aaPredicted RBP7.23□□□□□ -1.25
VIM-202ENST00000421459 RNF145Q96MT1 663 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 LMF2Q9BU23 707 aaKnown RBP7.23□□□□□ -1.25
VIM-202ENST00000421459 STMN4Q9H169 189 aaPredicted RBP7.23□□□□□ -1.25
VIM-202ENST00000421459 C12orf65Q9H3J6 166 aaKnown RBP7.23□□□□□ -1.25
VIM-202ENST00000421459 GSTO2Q9H4Y5 243 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 CXorf56Q9H5V9 222 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 Q9N2J8 555 aa7.23□□□□□ -1.25
VIM-202ENST00000421459 MID1IP1Q9NPA3 183 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms