RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 ZNF311Q5JNZ3 666 aa13.11□□□□□ -0.31
SF3B1-204ENST00000414963 ACER2Q5QJU3 275 aa13.11□□□□□ -0.31
SF3B1-204ENST00000414963 AAGABQ6PD74 315 aa13.11□□□□□ -0.31
SF3B1-204ENST00000414963 ENPP6Q6UWR7 440 aa13.11□□□□□ -0.31
SF3B1-204ENST00000414963 SPACA3Q8IXA5 215 aa13.11□□□□□ -0.31
SF3B1-204ENST00000414963 CMIPQ8IY22 773 aa13.11□□□□□ -0.31
SF3B1-204ENST00000414963 PRR22Q8IZ63 422 aa13.11□□□□□ -0.31
SF3B1-204ENST00000414963 FAM86B1Q8N7N1 296 aa13.11□□□□□ -0.31
SF3B1-204ENST00000414963 GPR32P1Q8NGA4 272 aa13.11□□□□□ -0.31
SF3B1-204ENST00000414963 BRIX1Q8TDN6 353 aaKnown RBP13.11□□□□□ -0.31
SF3B1-204ENST00000414963 SLC26A7Q8TE54 656 aa13.11□□□□□ -0.31
SF3B1-204ENST00000414963 CANT1Q8WVQ1 401 aa13.11□□□□□ -0.31
SF3B1-204ENST00000414963 APOBEC4Q8WW27 367 aaKnown RBP13.11□□□□□ -0.31
SF3B1-204ENST00000414963 HGDQ93099 445 aa13.11□□□□□ -0.31
SF3B1-204ENST00000414963 SLCO4A1Q96BD0 722 aa13.11□□□□□ -0.31
SF3B1-204ENST00000414963 EFHD2Q96C19 240 aaPredicted RBP13.11□□□□□ -0.31
SF3B1-204ENST00000414963 RSRC1Q96IZ7 334 aaKnown RBP13.11□□□□□ -0.31
SF3B1-204ENST00000414963 QRSL1Q9H0R6 528 aaKnown RBP13.11□□□□□ -0.31
SF3B1-204ENST00000414963 EVA1AQ9H8M9 152 aa13.11□□□□□ -0.31
SF3B1-204ENST00000414963 CACYBPQ9HB71 228 aaKnown RBP13.11□□□□□ -0.31
SF3B1-204ENST00000414963 ARMC1Q9NVT9 282 aa13.11□□□□□ -0.31
SF3B1-204ENST00000414963 WDR70Q9NW82 654 aa13.11□□□□□ -0.31
SF3B1-204ENST00000414963 ANAPC2Q9UJX6 822 aa13.11□□□□□ -0.31
SF3B1-204ENST00000414963 DTNAQ9Y4J8 743 aa13.11□□□□□ -0.31
SF3B1-204ENST00000414963 CENPVL1A0A0U1RR11 272 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 RRP8O43159 456 aaKnown RBP13.1□□□□□ -0.31
SF3B1-204ENST00000414963 MGRN1O60291 552 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 FADS1O60427 444 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 MAN1A2O60476 641 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 TPST1O60507 370 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 UGT2B11O75310 529 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 LGI1O95970 557 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 OPN1SWP03999 348 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 SEMG1P04279 462 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 PSMA4P25789 261 aaKnown RBP13.1□□□□□ -0.31
SF3B1-204ENST00000414963 RFX3P48380 749 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 SSR4P51571 173 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 EEF1A1P68104 462 aaKnown RBP13.1□□□□□ -0.31
SF3B1-204ENST00000414963 KCNJ10P78508 379 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 RIPK1Q13546 671 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 GRAMD1BQ3KR37 738 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 LIN52Q52LA3 116 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 FAM98BQ52LJ0 330 aaKnown RBP13.1□□□□□ -0.31
SF3B1-204ENST00000414963 RNF220Q5VTB9 566 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 VRK2Q86Y07 508 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 APLFQ8IW19 511 aaPredicted RBP13.1□□□□□ -0.31
SF3B1-204ENST00000414963 GPALPP1Q8IXQ4 340 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 GALNT16Q8N428 558 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 SMYD1Q8NB12 490 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 ZNF527Q8NB42 609 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 SLC35B4Q969S0 331 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 SPACA9Q96E40 222 aaPredicted RBP13.1□□□□□ -0.31
SF3B1-204ENST00000414963 HSH2DQ96JZ2 352 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 SECISBP2Q96T21 854 aaKnown RBP13.1□□□□□ -0.31
SF3B1-204ENST00000414963 ING2Q9H160 280 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 ZBTB20Q9HC78 741 aaPredicted RBP13.1□□□□□ -0.31
SF3B1-204ENST00000414963 S100A14Q9HCY8 104 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.1□□□□□ -0.31
SF3B1-204ENST00000414963 TEKT2Q9UIF3 430 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 ABCG2Q9UNQ0 655 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 ZNF443Q9Y2A4 671 aaPredicted RBP13.1□□□□□ -0.31
SF3B1-204ENST00000414963 CHST2Q9Y4C5 530 aa13.1□□□□□ -0.31
SF3B1-204ENST00000414963 A0A1W2PQD3 144 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 CDHR4A6H8M9 788 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 SERINC4A6NH21 518 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 ARGFXA6NJG6 315 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 ALG1L2C9J202 215 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 ICOSLGO75144 302 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 DNAJB5O75953 348 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 OR6B1O95007 311 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 OXSR1O95747 527 aaPredicted RBP13.09□□□□□ -0.31
SF3B1-204ENST00000414963 EPPINO95925 133 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 APC2O95996 2303 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 FESP07332 822 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 RAP2AP10114 183 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 IL7RP16871 459 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 ENDOUP21128 410 aaKnown RBP13.09□□□□□ -0.31
SF3B1-204ENST00000414963 ITGA3P26006 1051 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 SOX3P41225 446 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 MAGEA2P43356 314 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 CHRNB3Q05901 458 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 FGFBP1Q14512 234 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 IFI44LQ53G44 452 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 EIPR1Q53HC9 387 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 PDZK1Q5T2W1 519 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 FNDC7Q5VTL7 733 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 FCRLBQ6BAA4 426 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 TMEM81Q6P7N7 255 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 ERMP1Q7Z2K6 904 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 PIWIL3Q7Z3Z3 882 aaKnown RBP13.09□□□□□ -0.31
SF3B1-204ENST00000414963 VTCN1Q7Z7D3 282 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 GRAMD2AQ8IUY3 354 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 SIRT6Q8N6T7 355 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 GEMIN6Q8WXD5 167 aaKnown RBP13.09□□□□□ -0.31
SF3B1-204ENST00000414963 PROX1Q92786 737 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 STMN2Q93045 179 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 TMCO6Q96DC7 493 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 TPD52L3Q96J77 140 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 C7orf34Q96L11 122 aa13.09□□□□□ -0.31
SF3B1-204ENST00000414963 ARMC7Q9H6L4 198 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms