RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 OR5H8P0DN80 308 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 ADIRFQ15847 76 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 OR4E2Q8NGC2 313 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 OR8J1Q8NGP2 316 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 FBRSL1Q9HCM7 1045 aaKnown RBP12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 B4DXG7 233 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 SCO2O43819 266 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 EFNA3P52797 238 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 SRYQ05066 204 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 PRSS48Q7RTY5 328 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 OR5W2Q8NH69 310 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 OR4A16Q8NH70 328 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 PXYLP1Q8TE99 480 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 EBF1Q9UH73 591 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 NCOA3Q9Y6Q9 1424 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 PPLO60437 1756 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 ANKRD30BLA7E2S9 258 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 CPN1P15169 458 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 BDKRB1P46663 353 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 SFT2D3Q587I9 215 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 PAGE3Q5JUK9 113 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 OR51A7Q8NH64 312 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 C14orf79Q96F83 325 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 DERL2Q9GZP9 239 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 MCOLN1Q9GZU1 580 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 CFAP20Q9Y6A4 193 aaKnown RBP12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 IRAK2O43187 625 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 HNRNPA3P51991 378 aaKnown RBP12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 ACSM3Q53FZ2 586 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 NBPF12Q5TAG4 269 aaPredicted RBP12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 RNLSQ5VYX0 342 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 IL20RBQ6UXL0 311 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 ZNF582Q96NG8 517 aaPredicted RBP12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 TSGA13Q96PP4 275 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 OSGIN2Q9Y236 505 aa12.67□□□□□ -0.38
CCDC88A-204ENST00000413716 ADAM12O43184 909 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 CDC123O75794 336 aaPredicted RBP12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 FBLP22087 321 aaKnown RBP12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 TAS2R19P59542 299 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 CTSL3PQ5NE16 218 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 SGTBQ96EQ0 304 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 SLC41A2Q96JW4 573 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 RPL10LQ96L21 214 aaKnown RBP12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 ZNF587Q96SQ5 575 aaPredicted RBP12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 NKX3-1Q99801 234 aaPredicted RBP12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 ARPC5LQ9BPX5 153 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 ALG8Q9BVK2 526 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 TBPP20226 339 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 HACD4Q5VWC8 232 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 PPP2R2DQ66LE6 453 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 SHFQ7M4L6 423 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 SEMA4CQ9C0C4 833 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 MMP28Q9H239 520 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 SLC6A14Q9UN76 642 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 KIAA1324LA8MWY0 1029 aaPredicted RBP12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 SRPX2O60687 465 aaPredicted RBP12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 FBXO24O75426 580 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 PGCP20142 388 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 HOXA11P31270 313 aaPredicted RBP12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 PRPS1P60891 318 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 MAMDC2Q7Z304 686 aaPredicted RBP12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 SOX17Q9H6I2 414 aaPredicted RBP12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 STEAP1Q9UHE8 339 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 GAB2Q9UQC2 676 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 V9GYS6 101 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 NCBP2LA6PVI3 153 aaKnown RBP12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 B4GALT4O60513 344 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 STAG3L2P0CL84 134 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 RAB5AP20339 215 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 SNCAP37840 140 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 RAP2BP61225 183 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 SLC22A6Q4U2R8 563 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 IRF2BP2Q7Z5L9 587 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 OR7G3Q8NG95 312 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 OR6F1Q8NGZ6 308 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 ISYNA1Q9NPH2 558 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 ABCC3O15438 1527 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 KIAA1210Q9ULL0 1709 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 MMP20O60882 483 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 LRCH4O75427 683 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 OR2C1O95371 312 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 GIPRP48546 466 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 DAZLQ92904 295 aaKnown RBP12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 CENPOQ9BU64 300 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 GPR83Q9NYM4 423 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 PLEK2Q9NYT0 353 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 PRELID3BQ9Y3B1 194 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 A0A0U1RQJ8 604 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 SLC22A23A1A5C7 686 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 SYPP08247 313 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 CLDN6P56747 220 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 DESI1Q6ICB0 168 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 FAM180BQ6P0A1 224 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 FBXW11Q9UKB1 542 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 SETD1AO15047 1707 aaKnown RBP12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 TO15178 435 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 FAM189A1O60320 539 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 CLIC3O95833 236 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 TGM4P49221 684 aa12.66□□□□□ -0.38
CCDC88A-204ENST00000413716 DHPSP49366 369 aaPredicted RBP12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms