RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 MBD3L2Q8NHZ7 208 aaPredicted RBP17.26■□□□□ 0.35
SF3A1-202ENST00000411423 ZPLD1Q8TCW7 415 aa17.26■□□□□ 0.35
SF3A1-202ENST00000411423 MGARPQ8TDB4 240 aa17.26■□□□□ 0.35
SF3A1-202ENST00000411423 CDS1Q92903 461 aa17.26■□□□□ 0.35
SF3A1-202ENST00000411423 SFXN2Q96NB2 322 aa17.26■□□□□ 0.35
SF3A1-202ENST00000411423 GPATCH2Q9NW75 528 aa17.26■□□□□ 0.35
SF3A1-202ENST00000411423 NOP53Q9NZM5 478 aaKnown RBP17.26■□□□□ 0.35
SF3A1-202ENST00000411423 EIF3LQ9Y262 564 aaKnown RBP17.26■□□□□ 0.35
SF3A1-202ENST00000411423 SNX8Q9Y5X2 465 aa17.26■□□□□ 0.35
SF3A1-202ENST00000411423 HSPB2A8KAH6 182 aa17.25■□□□□ 0.35
SF3A1-202ENST00000411423 SHISA8B8ZZ34 492 aa17.25■□□□□ 0.35
SF3A1-202ENST00000411423 H0YC42 278 aa17.25■□□□□ 0.35
SF3A1-202ENST00000411423 ANKRD28O15084 1053 aa17.25■□□□□ 0.35
SF3A1-202ENST00000411423 ANGPTL1O95841 491 aa17.25■□□□□ 0.35
SF3A1-202ENST00000411423 ALOX5P09917 674 aa17.25■□□□□ 0.35
SF3A1-202ENST00000411423 ZNF708P17019 499 aa17.25■□□□□ 0.35
SF3A1-202ENST00000411423 BMP5P22003 454 aa17.25■□□□□ 0.35
SF3A1-202ENST00000411423 RPL3P39023 403 aaKnown RBP17.25■□□□□ 0.35
SF3A1-202ENST00000411423 TPD52P55327 224 aaPredicted RBP17.25■□□□□ 0.35
SF3A1-202ENST00000411423 MAGOHP61326 146 aaKnown RBP17.25■□□□□ 0.35
SF3A1-202ENST00000411423 HBA1P69905 142 aa17.25■□□□□ 0.35
SF3A1-202ENST00000411423 PHC1P78364 1004 aa17.25■□□□□ 0.35
SF3A1-202ENST00000411423 FOXF2Q12947 444 aa17.25■□□□□ 0.35
SF3A1-202ENST00000411423 HSPB2Q16082 182 aa17.25■□□□□ 0.35
SF3A1-202ENST00000411423 OR4F3Q6IEY1 312 aa17.25■□□□□ 0.35
SF3A1-202ENST00000411423 GATSQ8NAP1 163 aa17.25■□□□□ 0.35
SF3A1-202ENST00000411423 OR5AK3PQ8NH89 298 aa17.25■□□□□ 0.35
SF3A1-202ENST00000411423 LURAP1Q96LR2 239 aa17.25■□□□□ 0.35
SF3A1-202ENST00000411423 DUSP26Q9BV47 211 aa17.25■□□□□ 0.35
SF3A1-202ENST00000411423 BHLHE41Q9C0J9 482 aaPredicted RBP17.25■□□□□ 0.35
SF3A1-202ENST00000411423 SERHL2Q9H4I8 314 aa17.25■□□□□ 0.35
SF3A1-202ENST00000411423 TACC2O95359 2948 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 IGLV3-32A0A0A0MS00 114 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 CLCA1A8K7I4 914 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 H0Y3Z8 333 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 SDHDO14521 159 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 SCN2BO60939 215 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 ALDOCP09972 364 aaKnown RBP17.24■□□□□ 0.35
SF3A1-202ENST00000411423 HK1P19367 917 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 CHMP24386 653 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 CCT3P49368 545 aaKnown RBP17.24■□□□□ 0.35
SF3A1-202ENST00000411423 PSMD4P55036 377 aaKnown RBP17.24■□□□□ 0.35
SF3A1-202ENST00000411423 CPEB4Q17RY0 729 aaKnown RBP eCLIP17.24■□□□□ 0.35
SF3A1-202ENST00000411423 SMU1Q2TAY7 513 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 PGS1Q32NB8 556 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 SLC25A35Q3KQZ1 300 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 VPS26BQ4G0F5 336 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 HHATQ5VTY9 493 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 ZCCHC12Q6PEW1 402 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 ARSKQ6UWY0 536 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 CROCCP2Q86T23 111 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 JADE3Q92613 823 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 C1GALT1C1Q96EU7 318 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 C14orf79Q96F83 325 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 SH3GL2Q99962 352 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 RUBCNLQ9H714 662 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 CALHM2Q9HA72 323 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 MEAF6Q9HAF1 191 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 CLCF1Q9UBD9 225 aa17.24■□□□□ 0.35
SF3A1-202ENST00000411423 MRTO4Q9UKD2 239 aaKnown RBP17.24■□□□□ 0.35
SF3A1-202ENST00000411423 INTS1Q8N201 2190 aaKnown RBP17.23■□□□□ 0.35
SF3A1-202ENST00000411423 DOCK7Q96N67 2140 aa17.23■□□□□ 0.35
SF3A1-202ENST00000411423 NPIPA5A0A0B4J1W7 369 aa17.23■□□□□ 0.35
SF3A1-202ENST00000411423 ALG1L2C9J202 215 aa17.23■□□□□ 0.35
SF3A1-202ENST00000411423 FAM47E-STBD1D6RA91 191 aa17.23■□□□□ 0.35
SF3A1-202ENST00000411423 NPIPA7E9PJI5 369 aa17.23■□□□□ 0.35
SF3A1-202ENST00000411423 SNNO75324 88 aaPredicted RBP17.23■□□□□ 0.35
SF3A1-202ENST00000411423 C1QCP02747 245 aa17.23■□□□□ 0.35
SF3A1-202ENST00000411423 NPIPA8P0DM63 369 aa17.23■□□□□ 0.35
SF3A1-202ENST00000411423 TBXA2RP21731 343 aa17.23■□□□□ 0.35
SF3A1-202ENST00000411423 PRIM2P49643 509 aa17.23■□□□□ 0.35
SF3A1-202ENST00000411423 RNF144AP50876 292 aaPredicted RBP17.23■□□□□ 0.35
SF3A1-202ENST00000411423 SUCLG1P53597 346 aaKnown RBP17.23■□□□□ 0.35
SF3A1-202ENST00000411423 TLE4Q04727 773 aa17.23■□□□□ 0.35
SF3A1-202ENST00000411423 MAD2L1Q13257 205 aaPredicted RBP17.23■□□□□ 0.35
SF3A1-202ENST00000411423 TP53BP2Q13625 1128 aa17.23■□□□□ 0.35
SF3A1-202ENST00000411423 CD226Q15762 336 aa17.23■□□□□ 0.35
SF3A1-202ENST00000411423 CDC73Q6P1J9 531 aa17.23■□□□□ 0.35
SF3A1-202ENST00000411423 ENPP6Q6UWR7 440 aa17.23■□□□□ 0.35
SF3A1-202ENST00000411423 COX18Q8N8Q8 333 aa17.23■□□□□ 0.35
SF3A1-202ENST00000411423 TEX37Q96LM6 180 aa17.23■□□□□ 0.35
SF3A1-202ENST00000411423 TBL1XR1Q9BZK7 514 aa17.23■□□□□ 0.35
SF3A1-202ENST00000411423 PIGUQ9H490 435 aa17.23■□□□□ 0.35
SF3A1-202ENST00000411423 ATAD3AQ9NVI7 634 aa17.23■□□□□ 0.35
SF3A1-202ENST00000411423 GIN1Q9NXP7 522 aa17.23■□□□□ 0.35
SF3A1-202ENST00000411423 ZNF337Q9Y3M9 751 aa17.23■□□□□ 0.35
SF3A1-202ENST00000411423 L3MBTL1Q9Y468 752 aa17.23■□□□□ 0.35
SF3A1-202ENST00000411423 NUP214P35658 2090 aaPredicted RBP17.22■□□□□ 0.35
SF3A1-202ENST00000411423 OR2M5A3KFT3 312 aa17.22■□□□□ 0.35
SF3A1-202ENST00000411423 HCRTR2O43614 444 aa17.22■□□□□ 0.35
SF3A1-202ENST00000411423 TGM6O95932 706 aa17.22■□□□□ 0.35
SF3A1-202ENST00000411423 IL2RAP01589 272 aa17.22■□□□□ 0.35
SF3A1-202ENST00000411423 NGFRP08138 427 aa17.22■□□□□ 0.35
SF3A1-202ENST00000411423 RPS26P62854 115 aaKnown RBP17.22■□□□□ 0.35
SF3A1-202ENST00000411423 POU6F2P78424 691 aaPredicted RBP17.22■□□□□ 0.35
SF3A1-202ENST00000411423 TMEM44Q2T9K0 475 aa17.22■□□□□ 0.35
SF3A1-202ENST00000411423 RAET1LQ5VY80 246 aa17.22■□□□□ 0.35
SF3A1-202ENST00000411423 AAGABQ6PD74 315 aa17.22■□□□□ 0.35
SF3A1-202ENST00000411423 OLIG3Q7RTU3 272 aa17.22■□□□□ 0.35
SF3A1-202ENST00000411423 OR5D16Q8NGK9 328 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms