RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 TRMT12Q53H54 448 aaKnown RBP12.63□□□□□ -0.39
LIMS1-205ENST00000410093 C3orf38Q5JPI3 329 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 ZNF613Q6PF04 617 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 ZNF836Q6ZNA1 936 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 TCEANCQ8N8B7 351 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 ANKRD9Q96BM1 317 aaPredicted RBP12.63□□□□□ -0.39
LIMS1-205ENST00000410093 ZDHHC12Q96GR4 267 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 SPACA7Q96KW9 195 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 ZNF559Q9BR84 538 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 DCSTAMPQ9H295 470 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 AMBNQ9NP70 447 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 FGF20Q9NP95 211 aaPredicted RBP12.63□□□□□ -0.39
LIMS1-205ENST00000410093 ADAP2Q9NPF8 381 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 SEMA4GQ9NTN9 838 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 CHCHD3Q9NX63 227 aaKnown RBP12.63□□□□□ -0.39
LIMS1-205ENST00000410093 TVP23BQ9NYZ1 205 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 CHST2Q9Y4C5 530 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 HEMK1Q9Y5R4 338 aaPredicted RBP12.63□□□□□ -0.39
LIMS1-205ENST00000410093 USP34Q70CQ2 3546 aa12.63□□□□□ -0.39
LIMS1-205ENST00000410093 HTR3EA5X5Y0 456 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 CDHR4A6H8M9 788 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 TLCD2A6NGC4 264 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 LMO7DNF2Z398 122 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 ZNF749O43361 778 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 CHST10O43529 356 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 CBFA2T3O75081 653 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 ZBTB11O95625 1053 aaPredicted RBP12.62□□□□□ -0.39
LIMS1-205ENST00000410093 PTHP01270 115 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 CELA2BP08218 269 aaPredicted RBP12.62□□□□□ -0.39
LIMS1-205ENST00000410093 LIMK1P53667 647 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 HSD17B7P56937 341 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 VBP1P61758 197 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 COPZ1P61923 177 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 ZNF91Q05481 1191 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 MLLT11Q13015 90 aaPredicted RBP12.62□□□□□ -0.39
LIMS1-205ENST00000410093 SERTAD2Q14140 314 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 GAS6Q14393 721 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 SNAPC1Q16533 368 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 GDF7Q7Z4P5 450 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 OR4N5Q8IXE1 308 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 GALNT12Q8IXK2 581 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 CMIPQ8IY22 773 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 CDK20Q8IZL9 346 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 NANOGP1Q8N7R0 232 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 OR6Q1Q8NGQ2 317 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 WDR36Q8NI36 951 aaKnown RBP12.62□□□□□ -0.39
LIMS1-205ENST00000410093 GPR151Q8TDV0 419 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 RBM18Q96H35 190 aaKnown RBP12.62□□□□□ -0.39
LIMS1-205ENST00000410093 IL4I1Q96RQ9 567 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 G6PC3Q9BUM1 346 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 TSSK6Q9BXA6 273 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 QRSL1Q9H0R6 528 aaKnown RBP12.62□□□□□ -0.39
LIMS1-205ENST00000410093 AKIP1Q9NQ31 210 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 GMEB2Q9UKD1 530 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 CFL2Q9Y281 166 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 MRPS2Q9Y399 296 aaKnown RBP12.62□□□□□ -0.39
LIMS1-205ENST00000410093 EXOSC1Q9Y3B2 195 aaKnown RBP12.62□□□□□ -0.39
LIMS1-205ENST00000410093 PCDHGA3Q9Y5H0 932 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 PTPRZ1P23471 2315 aaPredicted RBP12.62□□□□□ -0.39
LIMS1-205ENST00000410093 FITM1A5D6W6 292 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 CPSF4LA6NMK7 179 aaKnown RBP12.62□□□□□ -0.39
LIMS1-205ENST00000410093 KDM4EB2RXH2 506 aaPredicted RBP12.62□□□□□ -0.39
LIMS1-205ENST00000410093 TMX2-CTNND1H3BSU7 103 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 TAF4O00268 1085 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 KLF4O43474 513 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 TLX2O43763 284 aaPredicted RBP12.62□□□□□ -0.39
LIMS1-205ENST00000410093 MAN1A2O60476 641 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 PRAMEF2O60811 474 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 LDB3O75112 727 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 ZIC2O95409 532 aaPredicted RBP12.62□□□□□ -0.39
LIMS1-205ENST00000410093 TYRP1P17643 537 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 MYL12AP19105 171 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 FUT4P22083 530 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 SOX6P35712 828 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 RBM34P42696 430 aaKnown RBP12.62□□□□□ -0.39
LIMS1-205ENST00000410093 STX4Q12846 297 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 TMED1Q13445 227 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 C1orf61Q13536 156 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 SPHARQ15513 63 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 MED22Q15528 200 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 SYT16Q17RD7 645 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 ZNF404Q494X3 552 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 MINDY4Q4G0A6 757 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 SYT14P1Q58G82 188 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 ZNF542PQ5EBM4 170 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 ARMC4Q5T2S8 1044 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 PRICKLE2Q7Z3G6 844 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 CLIP4Q8N3C7 705 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 SLC15A4Q8N697 577 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 NDNFQ8TB73 568 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 BRIX1Q8TDN6 353 aaKnown RBP12.62□□□□□ -0.39
LIMS1-205ENST00000410093 FGF11Q92914 225 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 ZG16BQ96DA0 208 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 MVB12AQ96EY5 273 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 LRR1Q96L50 414 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 TAPBPLQ9BX59 468 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 SLIRPQ9GZT3 109 aaKnown RBP12.62□□□□□ -0.39
LIMS1-205ENST00000410093 NXF2Q9GZY0 626 aaKnown RBP12.62□□□□□ -0.39
LIMS1-205ENST00000410093 KLHL25Q9H0H3 589 aa12.62□□□□□ -0.39
LIMS1-205ENST00000410093 FN3KQ9H479 309 aa12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms