RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 RGS19P49795 217 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 HLCSP50747 726 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 PGDP52209 483 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 RUNX2Q13950 521 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 KCNAB1Q14722 419 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 ZIC1Q15915 447 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 ZNF691Q5VV52 312 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 KDM4DQ6B0I6 523 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 USP30Q70CQ3 517 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 CAMKMTQ7Z624 323 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 Q8N9G6 341 aaPredicted RBP10.12□□□□□ -0.79
NEDD9-201ENST00000379433 ZDHHC1Q8WTX9 485 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 TGM7Q96PF1 710 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 RBM38Q9H0Z9 239 aaKnown RBP10.12□□□□□ -0.79
NEDD9-201ENST00000379433 PSME2Q9UL46 239 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 HEBP2Q9Y5Z4 205 aa10.12□□□□□ -0.79
NEDD9-201ENST00000379433 PRAMEF26H0Y7S4 382 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 FFAR1O14842 300 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 CRTAPO75718 401 aaPredicted RBP10.11□□□□□ -0.79
NEDD9-201ENST00000379433 MT-ND2P03891 347 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 CHRM4P08173 479 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 HTR1AP08908 422 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 RNF224P0DH78 156 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 RYKP34925 604 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 TRHRP34981 398 aaPredicted RBP10.11□□□□□ -0.79
NEDD9-201ENST00000379433 FOXL2P58012 376 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 SEC23BQ15437 767 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 TBRG1Q3YBR2 411 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 PIWIL3Q7Z3Z3 882 aaKnown RBP10.11□□□□□ -0.79
NEDD9-201ENST00000379433 OR6T1Q8NGN1 323 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 NEURL3Q96EH8 262 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 EDEM2Q9BV94 578 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 SARGQ9BW04 601 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 SCN3BQ9NY72 215 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 P2RX2Q9UBL9 471 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 LOC100506127A0A0U1RQW1 187 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 ZNF98A6NK75 572 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 LDLRAD4O15165 306 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 SEMA7AO75326 666 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 SERPINI2O75830 405 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 CCNKO75909 580 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 CCNB2O95067 398 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 PRG2P13727 222 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 SLC15A1P46059 708 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 BCAP31P51572 246 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 PCBP4P57723 403 aaKnown RBP10.11□□□□□ -0.79
NEDD9-201ENST00000379433 TDGQ13569 410 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 FZD2Q14332 565 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 ZBED5Q49AG3 693 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 KRTCAP3Q53RY4 240 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 ZNF773Q6PK81 442 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 Q6ZNX1 250 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.11□□□□□ -0.79
NEDD9-201ENST00000379433 CAMKK1Q8N5S9 505 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 TMEM52Q8NDY8 209 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 ZNF680Q8NEM1 530 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 OR7G2Q8NG99 324 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 SUN3Q8TAQ9 357 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 CDS1Q92903 461 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 ZNF607Q96SK3 696 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 CCDC86Q9H6F5 360 aaKnown RBP10.11□□□□□ -0.79
NEDD9-201ENST00000379433 ACER3Q9NUN7 267 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 MED12Q93074 2177 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 MUC22E2RYF6 1773 aaPredicted RBP10.11□□□□□ -0.79
NEDD9-201ENST00000379433 PCDH15Q96QU1 1955 aa10.11□□□□□ -0.79
NEDD9-201ENST00000379433 PRRC2CQ9Y520 2896 aaKnown RBP10.1□□□□□ -0.79
NEDD9-201ENST00000379433 SHISA7A6NL88 538 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 A8MUA0 341 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 H3BMQ9 156 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 TRIM77I1YAP6 450 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 PROM1O43490 865 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 B3GALT2O43825 422 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 OCM2P0CE71 109 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 OCMP0CE72 109 aaPredicted RBP10.1□□□□□ -0.79
NEDD9-201ENST00000379433 GKN3PP0CG01 181 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 CD6P30203 668 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 GNG10P50151 68 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 SLC13A2Q13183 592 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 SQSTM1Q13501 440 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 FAM189A2Q15884 450 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 ZNF311Q5JNZ3 666 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 SLC30A6Q6NXT4 461 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 RRM2BQ7LG56 351 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 CSNK1A1LQ8N752 337 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 RORBQ92753 470 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 DNASE1L2Q92874 299 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 RPL3LQ92901 407 aaKnown RBP10.1□□□□□ -0.79
NEDD9-201ENST00000379433 MARC2Q969Z3 335 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 MTERF3Q96E29 417 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 PEX11GQ96HA9 241 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 SLC38A3Q99624 504 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 MAP3K3Q99759 626 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 FNDC11Q9BVV2 318 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 RIMS4Q9H426 269 aaPredicted RBP10.1□□□□□ -0.79
NEDD9-201ENST00000379433 FSCN3Q9NQT6 498 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 DNAJC27Q9NZQ0 273 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 UGT2B11O75310 529 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 UGT2B17O75795 530 aa10.1□□□□□ -0.79
NEDD9-201ENST00000379433 PLGP00747 810 aaPredicted RBP10.1□□□□□ -0.79
NEDD9-201ENST00000379433 GSTM2P28161 218 aa10.1□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms