RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ANXA11P50995 505 aaKnown RBP12.46□□□□□ -0.41
CCDC3-202ENST00000378839 RGS8P57771 180 aaPredicted RBP12.46□□□□□ -0.41
CCDC3-202ENST00000378839 ZNF45Q02386 682 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 CDC20Q12834 499 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 EXOSC7Q15024 291 aaKnown RBP12.46□□□□□ -0.41
CCDC3-202ENST00000378839 KCNJ8Q15842 424 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 USP53Q70EK8 1073 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 MINDY2Q8NBR6 621 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 TM9SF2Q99805 663 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 SMURF1Q9HCE7 757 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 CFL2Q9Y281 166 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 PEX16Q9Y5Y5 336 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 V9GYH0 126 aa12.46□□□□□ -0.41
CCDC3-202ENST00000378839 GSTM3P21266 225 aa12.46□□□□□ -0.42
CCDC3-202ENST00000378839 NDUFS1P28331 727 aa12.46□□□□□ -0.42
CCDC3-202ENST00000378839 S100A5P33763 92 aa12.46□□□□□ -0.42
CCDC3-202ENST00000378839 ST3GAL3Q11203 375 aa12.46□□□□□ -0.42
CCDC3-202ENST00000378839 DUSP8Q13202 625 aa12.46□□□□□ -0.42
CCDC3-202ENST00000378839 INSL4Q14641 139 aa12.46□□□□□ -0.42
CCDC3-202ENST00000378839 DECR1Q16698 335 aa12.46□□□□□ -0.42
CCDC3-202ENST00000378839 AADACL4Q5VUY2 407 aa12.46□□□□□ -0.42
CCDC3-202ENST00000378839 C22orf42Q6IC83 251 aa12.46□□□□□ -0.42
CCDC3-202ENST00000378839 LINC00471Q8N535 108 aa12.46□□□□□ -0.42
CCDC3-202ENST00000378839 TEX47Q8TBZ9 253 aa12.46□□□□□ -0.42
CCDC3-202ENST00000378839 FGF20Q9NP95 211 aaPredicted RBP12.46□□□□□ -0.42
CCDC3-202ENST00000378839 C20orf141Q9NUB4 165 aa12.46□□□□□ -0.42
CCDC3-202ENST00000378839 WDR45Q9Y484 360 aa12.46□□□□□ -0.42
CCDC3-202ENST00000378839 SPIN1Q9Y657 262 aaPredicted RBP12.46□□□□□ -0.42
CCDC3-202ENST00000378839 TCRBV21S2A2A0A5A6 115 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 ZC3H12DA2A288 527 aaKnown RBP12.45□□□□□ -0.42
CCDC3-202ENST00000378839 LRRC72A6NJI9 287 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 H3BQ06 376 aaPredicted RBP12.45□□□□□ -0.42
CCDC3-202ENST00000378839 MYL12BO14950 172 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 PRODHO43272 600 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 SUZ12Q15022 739 aaKnown RBP12.45□□□□□ -0.42
CCDC3-202ENST00000378839 ZNF79Q15937 498 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 ATAD3BQ5T9A4 648 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 SLC36A4Q6YBV0 504 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 PLEKHM3Q6ZWE6 761 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 LHFPL3Q86UP9 236 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 PFN4Q8NHR9 129 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 ACOT11Q8WXI4 607 aaPredicted RBP12.45□□□□□ -0.42
CCDC3-202ENST00000378839 NELL2Q99435 816 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 MTHFD2LQ9H903 347 aaPredicted RBP12.45□□□□□ -0.42
CCDC3-202ENST00000378839 FAM60AQ9NP50 221 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 ADAP2Q9NPF8 381 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 C2orf42Q9NWW7 574 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 IL20Q9NYY1 176 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 SEC14L4Q9UDX3 406 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 TBC1D24Q9ULP9 559 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 NCKAP1Q9Y2A7 1128 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 NOX1Q9Y5S8 564 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 A0A075B6Q4 140 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.45□□□□□ -0.42
CCDC3-202ENST00000378839 DVL2O14641 736 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 B3GALT2O43825 422 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 IGHV4-34P06331 123 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 PSMA1P25786 263 aaKnown RBP12.45□□□□□ -0.42
CCDC3-202ENST00000378839 SSTR4P31391 388 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 MTNR1AP48039 350 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 ZNF155Q12901 538 aaPredicted RBP12.45□□□□□ -0.42
CCDC3-202ENST00000378839 TIMM50Q3ZCQ8 353 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 C3orf38Q5JPI3 329 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 DESI1Q6ICB0 168 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 FLCNQ8NFG4 579 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 CSNK1G3Q9Y6M4 447 aa12.45□□□□□ -0.42
CCDC3-202ENST00000378839 GXYLT2A0PJZ3 443 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 ISPDA4D126 451 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 FAM183AA6NL82 134 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 ADAM11O75078 769 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 CDRT1O95170 752 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 ALOX5P09917 674 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 MAKP20794 623 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 FPR3P25089 353 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 CAV3P56539 151 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 SHC2P98077 582 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 BNC1Q01954 994 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 FIGNL1Q6PIW4 674 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 ZC3H14Q6PJT7 736 aaKnown RBP12.44□□□□□ -0.42
CCDC3-202ENST00000378839 ZNF620Q6ZNG0 422 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 MBOAT2Q6ZWT7 520 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 OR9Q1Q8NGQ5 310 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 SLC22A18Q96BI1 424 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 ZNF350Q9GZX5 532 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 MIXL1Q9H2W2 232 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 SP140LQ9H930 580 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 CPNE7Q9UBL6 633 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 PLEKHB1Q9UF11 243 aaPredicted RBP12.44□□□□□ -0.42
CCDC3-202ENST00000378839 C19orf53Q9UNZ5 99 aaPredicted RBP12.44□□□□□ -0.42
CCDC3-202ENST00000378839 BRWD1Q9NSI6 2320 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 SOCS6O14544 535 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 MED26O95402 600 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 RPS4Y1P22090 263 aaKnown RBP12.44□□□□□ -0.42
CCDC3-202ENST00000378839 SOX6P35712 828 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 WNT4P56705 351 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 FABP5Q01469 135 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 SELENBP1Q13228 472 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 MINDY4Q4G0A6 757 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 CELF2-AS1Q8N7Q2 184 aa12.44□□□□□ -0.42
CCDC3-202ENST00000378839 BAHD1Q8TBE0 780 aaPredicted RBP12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms