RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 LIM2P55344 173 aa13.58□□□□□ -0.23
TCOF1-202ENST00000377797 SMN1Q16637 294 aaKnown RBP13.58□□□□□ -0.23
TCOF1-202ENST00000377797 DUSP7Q16829 419 aa13.58□□□□□ -0.23
TCOF1-202ENST00000377797 MRPL2Q5T653 305 aaKnown RBP13.58□□□□□ -0.23
TCOF1-202ENST00000377797 ZNF691Q5VV52 312 aa13.58□□□□□ -0.23
TCOF1-202ENST00000377797 ARHGAP11AQ6P4F7 1023 aa13.58□□□□□ -0.23
TCOF1-202ENST00000377797 OR6N1Q8NGY5 312 aa13.58□□□□□ -0.23
TCOF1-202ENST00000377797 CSNK1G3Q9Y6M4 447 aa13.58□□□□□ -0.23
TCOF1-202ENST00000377797 ARL6IP5O75915 188 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 CRHBPP24387 322 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 TEAD1P28347 426 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 PYCR1P32322 319 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 OR12D2P58182 307 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 KIAA0040Q15053 153 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 MOGQ16653 247 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 BTBD16Q32M84 506 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 TMEM225Q6GV28 225 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 PAMR1Q6UXH9 720 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 KRT77Q7Z794 578 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 CPOQ8IVL8 374 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 UBE2J2Q8N2K1 259 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 SPEM1Q8N4L4 309 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 ANKRD53Q8N9V6 530 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 CYB561A3Q8NBI2 242 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 ANKK1Q8NFD2 765 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 CMKLR1Q99788 373 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 TM9SF2Q99805 663 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 CD93Q9NPY3 652 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 OLAHQ9NV23 265 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 NKIRAS2Q9NYR9 191 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 CBLCQ9ULV8 474 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 K7EQS6 105 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 FOXD2O60548 495 aaPredicted RBP13.58□□□□□ -0.24
TCOF1-202ENST00000377797 TFAP2AP05549 437 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 OR1D5P58170 312 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 PPP3R1P63098 170 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 MANEAQ5SRI9 462 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 PPP1R3BQ86XI6 285 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 PAPD5Q8NDF8 572 aaKnown RBP13.58□□□□□ -0.24
TCOF1-202ENST00000377797 PIGUQ9H490 435 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 LTB4R2Q9NPC1 389 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 A4GALTQ9NPC4 353 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 RLIMQ9NVW2 624 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 PAK1IP1Q9NWT1 392 aaPredicted RBP13.58□□□□□ -0.24
TCOF1-202ENST00000377797 PADI2Q9Y2J8 665 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 ZDBF2Q9HCK1 2354 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 LOC105369274A0A096LPK9 316 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 LOC102723532A0A0G2JNH3 316 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 SPTY2D1-AS1A0A0U1RR47 76 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 KCNJ5P48544 419 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 VASPP50552 380 aaPredicted RBP13.58□□□□□ -0.24
TCOF1-202ENST00000377797 ALKBH2Q6NS38 261 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 OR4N4Q8N0Y3 316 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 DNAJA4Q8WW22 397 aaPredicted RBP13.58□□□□□ -0.24
TCOF1-202ENST00000377797 TRIM63Q969Q1 353 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 GAL3ST1Q99999 423 aa13.58□□□□□ -0.24
TCOF1-202ENST00000377797 WSB2Q9NYS7 404 aaPredicted RBP13.58□□□□□ -0.24
TCOF1-202ENST00000377797 H3BSH0 61 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 F8A1P23610 371 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 CARTPTQ16568 116 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 ODF4Q2M2E3 257 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 MFSD12Q6NUT3 480 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 TBPL2Q6SJ96 375 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 GATAD2BQ8WXI9 593 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 LAMP5Q9UJQ1 280 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 ITGB1BP2Q9UKP3 347 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 BMP1P13497 986 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 ZNF12P17014 697 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 EIF1AXP47813 144 aaKnown RBP13.57□□□□□ -0.24
TCOF1-202ENST00000377797 GIPRP48546 466 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 RPS15P62841 145 aaKnown RBP13.57□□□□□ -0.24
TCOF1-202ENST00000377797 CRIPAKQ8N1N5 446 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 ZFP41Q8N8Y5 198 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 FNTBP49356 437 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 PHC1P78364 1004 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 UTS2BQ765I0 119 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 OR51L1Q8NGJ5 315 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 BAHD1Q8TBE0 780 aaPredicted RBP13.57□□□□□ -0.24
TCOF1-202ENST00000377797 BPIFA2Q96DR5 249 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 COX14Q96I36 57 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 GABRG3Q99928 467 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 NPLQ9BXD5 320 aaPredicted RBP13.57□□□□□ -0.24
TCOF1-202ENST00000377797 GAREM1Q9H706 876 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 DKKL1Q9UK85 242 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 ST14Q9Y5Y6 855 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 WASHC1A8K0Z3 465 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 MBTPS2O43462 519 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 ITGA10O75578 1167 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 SLITRK5O94991 958 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 NDUFB2O95178 105 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 GASTP01350 101 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 SLC35E2P0CK97 266 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 OTX2P32243 289 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 TAS2R43P59537 309 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 NCS1P62166 190 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 PLGLB1Q02325 96 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 WASH2PQ6VEQ5 465 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 OR6T1Q8NGN1 323 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 SAP130Q9H0E3 1048 aa13.57□□□□□ -0.24
TCOF1-202ENST00000377797 ZNF236Q9UL36 1845 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms