RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 OR4F15Q8NGB8 312 aa20.3■□□□□ 0.84
SHMT1-202ENST00000352886 UFD1Q92890 307 aa20.3■□□□□ 0.84
SHMT1-202ENST00000352886 RFKQ969G6 155 aa20.3■□□□□ 0.84
SHMT1-202ENST00000352886 ABHD8Q96I13 439 aa20.3■□□□□ 0.84
SHMT1-202ENST00000352886 TM9SF2Q99805 663 aa20.3■□□□□ 0.84
SHMT1-202ENST00000352886 ZFYVE21Q9BQ24 234 aa20.3■□□□□ 0.84
SHMT1-202ENST00000352886 S1PR5Q9H228 398 aa20.3■□□□□ 0.84
SHMT1-202ENST00000352886 NLGN3Q9NZ94 848 aa20.3■□□□□ 0.84
SHMT1-202ENST00000352886 CLEC1BQ9P126 229 aa20.3■□□□□ 0.84
SHMT1-202ENST00000352886 SF3B6Q9Y3B4 125 aaKnown RBP20.3■□□□□ 0.84
SHMT1-202ENST00000352886 CMAHPQ9Y471 501 aa20.3■□□□□ 0.84
SHMT1-202ENST00000352886 LRRC72A6NJI9 287 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 CDC42EP2O14613 210 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 PVRP15151 417 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 SLC1A3P43003 542 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 ZNF136P52737 540 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 EEF1A1P68104 462 aaKnown RBP20.29■□□□□ 0.84
SHMT1-202ENST00000352886 PGGHGQ32M88 737 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 FAM3CQ92520 227 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 KCTD7Q96MP8 289 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 WDFY2Q96P53 400 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 ARHGAP9Q9BRR9 750 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 TWSG1Q9GZX9 223 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 PIGUQ9H490 435 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 MUTYHQ9UIF7 546 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 H0YGG7 62 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 H3BQ06 376 aaPredicted RBP20.29■□□□□ 0.84
SHMT1-202ENST00000352886 TNFRSF10CO14798 259 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 NDUFV2P19404 249 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 SDC2P34741 201 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 ARF3P61204 181 aaPredicted RBP20.29■□□□□ 0.84
SHMT1-202ENST00000352886 MAPK14Q16539 360 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 CRTC2Q53ET0 693 aaPredicted RBP20.29■□□□□ 0.84
SHMT1-202ENST00000352886 EIPR1Q53HC9 387 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 ZFP41Q8N8Y5 198 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 RERGQ96A58 199 aaPredicted RBP20.29■□□□□ 0.84
SHMT1-202ENST00000352886 RIPOR3Q96MK2 946 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 ISYNA1Q9NPH2 558 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 TBC1D24Q9ULP9 559 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 C19orf53Q9UNZ5 99 aaPredicted RBP20.29■□□□□ 0.84
SHMT1-202ENST00000352886 CSNK1G3Q9Y6M4 447 aa20.29■□□□□ 0.84
SHMT1-202ENST00000352886 LRP4O75096 1905 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 SLC30A4O14863 429 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 SLC2A10O95528 541 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 ZNF24P17028 368 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 ZNF79Q15937 498 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 SPATC1Q76KD6 591 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 CLDN22Q8N7P3 220 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 BBS1Q8NFJ9 593 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 ZNF350Q9GZX5 532 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 CDH10Q9Y6N8 788 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 EYSQ5T1H1 3165 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 FGF17O60258 216 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 THBS1P07996 1170 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 PRG2P13727 222 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 AZGP1P25311 298 aaKnown RBP20.28■□□□□ 0.84
SHMT1-202ENST00000352886 HOXD12P35452 270 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 RNF144AP50876 292 aaPredicted RBP20.28■□□□□ 0.84
SHMT1-202ENST00000352886 TPMTP51580 245 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 DCST2Q5T1A1 773 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 FHL5Q5TD97 284 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 AKAP14Q86UN6 197 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 RANBP3LQ86VV4 465 aaPredicted RBP20.28■□□□□ 0.84
SHMT1-202ENST00000352886 CELF2-AS1Q8N7Q2 184 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 SYT14Q8NB59 555 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 TMEM52Q8NDY8 209 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 TOR1AIP2Q8NFQ8 470 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 OR2T33Q8NG76 320 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 SAMD8Q96LT4 415 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 SLC28A3Q9HAS3 691 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 ABCB9Q9NP78 766 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 EVA1BQ9NVM1 165 aa20.28■□□□□ 0.84
SHMT1-202ENST00000352886 SMIM30A4D0T7 59 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 SLC35F4A4IF30 521 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 GKN3PP0CG01 181 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 GABRA5P31644 462 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 GCGRP47871 477 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 LSSP48449 732 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 CCDC92Q53HC0 331 aaPredicted RBP20.27■□□□□ 0.84
SHMT1-202ENST00000352886 TMEM92Q6UXU6 159 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 HSDL2Q6YN16 418 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 QSOX2Q6ZRP7 698 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 ZNF619Q8N2I2 560 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 ZNF485Q8NCK3 441 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 OR5T3Q8NGG3 340 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 LYRM4Q9HD34 91 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 MED17Q9NVC6 651 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 FBXO34Q9NWN3 711 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 PLEKHB1Q9UF11 243 aaPredicted RBP20.27■□□□□ 0.84
SHMT1-202ENST00000352886 LALBAP00709 142 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 NT5EP21589 574 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 SLC9A3P48764 834 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 FABP5Q01469 135 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 TMEM44Q2T9K0 475 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 TMCO6Q96DC7 493 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 PRSS27Q9BQR3 290 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 KRCC1Q9NPI7 259 aaPredicted RBP20.27■□□□□ 0.84
SHMT1-202ENST00000352886 PRDM9Q9NQV7 894 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 CLCA2Q9UQC9 943 aa20.27■□□□□ 0.84
SHMT1-202ENST00000352886 NPIPA5A0A0B4J1W7 369 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 120.7 ms