RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 ZFP41Q8N8Y5 198 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 CAMKVQ8NCB2 501 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 PSD4Q8NDX1 1056 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 HMGB4Q8WW32 186 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 RERGQ96A58 199 aaPredicted RBP18.04■□□□□ 0.48
COL9A3-201ENST00000343916 EFHD2Q96C19 240 aaPredicted RBP18.04■□□□□ 0.48
COL9A3-201ENST00000343916 PHOX2BQ99453 314 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 SLC30A2Q9BRI3 323 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 TXNL4BQ9NX01 149 aaKnown RBP18.04■□□□□ 0.48
COL9A3-201ENST00000343916 LOC110117498-PIK3R3F6TDL0 507 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 HCRTR1O43613 425 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 FUT1P19526 365 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 RAB40BQ12829 278 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 DECR1Q16698 335 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 LRIT3Q3SXY7 679 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 C3orf38Q5JPI3 329 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 DESI1Q6ICB0 168 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 LHFPL3Q86UP9 236 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 LAX1Q8IWV1 398 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 BBS1Q8NFJ9 593 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 GPR151Q8TDV0 419 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 TXNDC15Q96J42 360 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 CTRCQ99895 268 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 TOR4AQ9NXH8 423 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 CPNE7Q9UBL6 633 aa18.04■□□□□ 0.48
COL9A3-201ENST00000343916 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.03■□□□□ 0.48
COL9A3-201ENST00000343916 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.03■□□□□ 0.48
COL9A3-201ENST00000343916 PEX12O00623 359 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 TNFRSF10CO14798 259 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 CDRT1O95170 752 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 TSPAN19P0C672 248 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 CPEP16870 476 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 GABRG2P18507 467 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 FPR3P25089 353 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 ZNF136P52737 540 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 EXOSC7Q15024 291 aaKnown RBP18.03■□□□□ 0.48
COL9A3-201ENST00000343916 LARS2Q15031 903 aaKnown RBP18.03■□□□□ 0.48
COL9A3-201ENST00000343916 MINDY4Q4G0A6 757 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 GDPGP1Q6ZNW5 385 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 OR4F15Q8NGB8 312 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 TM9SF2Q99805 663 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 TRIM45Q9H8W5 580 aaPredicted RBP18.03■□□□□ 0.48
COL9A3-201ENST00000343916 CAPN10Q9HC96 672 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 HRASLS2Q9NWW9 162 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 PTGFRNQ9P2B2 879 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 KCNE5Q9UJ90 142 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 CSNK1G3Q9Y6M4 447 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 TDRD6O60522 2096 aaKnown RBP18.03■□□□□ 0.48
COL9A3-201ENST00000343916 A0A075B6Q4 140 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 CLEC2LP0C7M8 214 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 NT5EP21589 574 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 ETV6P41212 452 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 RORCP51449 518 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 CDH11P55287 796 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 RPS25P62851 125 aaKnown RBP18.03■□□□□ 0.48
COL9A3-201ENST00000343916 ZMAT1Q5H9K5 638 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 SAMD14Q8IZD0 417 aaPredicted RBP18.03■□□□□ 0.48
COL9A3-201ENST00000343916 NR4A3Q92570 626 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 ANKRD19PQ9H560 264 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 IL20Q9NYY1 176 aa18.03■□□□□ 0.48
COL9A3-201ENST00000343916 CRNNQ9UBG3 495 aaPredicted RBP18.03■□□□□ 0.48
COL9A3-201ENST00000343916 SURF4O15260 269 aa18.02■□□□□ 0.48
COL9A3-201ENST00000343916 SSX4O60224 188 aa18.02■□□□□ 0.48
COL9A3-201ENST00000343916 LIMS3P0CW19 117 aa18.02■□□□□ 0.48
COL9A3-201ENST00000343916 LIMS4P0CW20 117 aa18.02■□□□□ 0.48
COL9A3-201ENST00000343916 SPTBP11277 2137 aa18.02■□□□□ 0.48
COL9A3-201ENST00000343916 AKT2P31751 481 aa18.02■□□□□ 0.48
COL9A3-201ENST00000343916 EEF1A1P68104 462 aaKnown RBP18.02■□□□□ 0.48
COL9A3-201ENST00000343916 C6orf183Q5T699 404 aa18.02■□□□□ 0.48
COL9A3-201ENST00000343916 FHL5Q5TD97 284 aa18.02■□□□□ 0.48
COL9A3-201ENST00000343916 FIGNL1Q6PIW4 674 aa18.02■□□□□ 0.48
COL9A3-201ENST00000343916 B3GLCTQ6Y288 498 aa18.02■□□□□ 0.48
COL9A3-201ENST00000343916 HSDL2Q6YN16 418 aa18.02■□□□□ 0.48
COL9A3-201ENST00000343916 ZNF620Q6ZNG0 422 aa18.02■□□□□ 0.48
COL9A3-201ENST00000343916 MBOAT2Q6ZWT7 520 aa18.02■□□□□ 0.48
COL9A3-201ENST00000343916 LAPTM4BQ86VI4 370 aa18.02■□□□□ 0.48
COL9A3-201ENST00000343916 POGLUT1Q8NBL1 392 aa18.02■□□□□ 0.48
COL9A3-201ENST00000343916 CAPSLQ8WWF8 208 aa18.02■□□□□ 0.48
COL9A3-201ENST00000343916 SLX1AQ9BQ83 275 aa18.02■□□□□ 0.48
COL9A3-201ENST00000343916 MRPS18AQ9NVS2 196 aaKnown RBP18.02■□□□□ 0.48
COL9A3-201ENST00000343916 C19orf53Q9UNZ5 99 aaPredicted RBP18.02■□□□□ 0.48
COL9A3-201ENST00000343916 FAM183AA6NL82 134 aa18.01■□□□□ 0.47
COL9A3-201ENST00000343916 KDM4EB2RXH2 506 aaPredicted RBP18.01■□□□□ 0.47
COL9A3-201ENST00000343916 KLF4O43474 513 aa18.01■□□□□ 0.47
COL9A3-201ENST00000343916 CTSBP07858 339 aa18.01■□□□□ 0.47
COL9A3-201ENST00000343916 CT62P0C5K7 136 aa18.01■□□□□ 0.47
COL9A3-201ENST00000343916 DRD1P21728 446 aa18.01■□□□□ 0.47
COL9A3-201ENST00000343916 TCEA1P23193 301 aaKnown RBP18.01■□□□□ 0.47
COL9A3-201ENST00000343916 HTR2AP28223 471 aa18.01■□□□□ 0.47
COL9A3-201ENST00000343916 DCST2Q5T1A1 773 aa18.01■□□□□ 0.47
COL9A3-201ENST00000343916 MRPL2Q5T653 305 aaKnown RBP18.01■□□□□ 0.47
COL9A3-201ENST00000343916 WDR88Q6ZMY6 472 aa18.01■□□□□ 0.47
COL9A3-201ENST00000343916 SPATC1Q76KD6 591 aa18.01■□□□□ 0.47
COL9A3-201ENST00000343916 SYT14Q8NB59 555 aa18.01■□□□□ 0.47
COL9A3-201ENST00000343916 BAHD1Q8TBE0 780 aaPredicted RBP18.01■□□□□ 0.47
COL9A3-201ENST00000343916 ASB15Q8WXK1 588 aa18.01■□□□□ 0.47
COL9A3-201ENST00000343916 OTULINQ96BN8 352 aa18.01■□□□□ 0.47
COL9A3-201ENST00000343916 C1GALT1C1Q96EU7 318 aa18.01■□□□□ 0.47
COL9A3-201ENST00000343916 TWSG1Q9GZX9 223 aa18.01■□□□□ 0.47
COL9A3-201ENST00000343916 PIGUQ9H490 435 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms