RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 C17orf64Q86WR6 236 aa20.92■□□□□ 0.94
TRIM28-202ENST00000341753 C12orf40Q86WS4 652 aa20.92■□□□□ 0.94
TRIM28-202ENST00000341753 SMAP2Q8WU79 429 aaPredicted RBP20.92■□□□□ 0.94
TRIM28-202ENST00000341753 CBLCQ9ULV8 474 aa20.92■□□□□ 0.94
TRIM28-202ENST00000341753 ASB4Q9Y574 426 aa20.92■□□□□ 0.94
TRIM28-202ENST00000341753 KPNA3O00505 521 aaPredicted RBP20.92■□□□□ 0.94
TRIM28-202ENST00000341753 KIAA0355O15063 1070 aa20.92■□□□□ 0.94
TRIM28-202ENST00000341753 HMGN2P05204 90 aaKnown RBP20.92■□□□□ 0.94
TRIM28-202ENST00000341753 SYN1P17600 705 aa20.92■□□□□ 0.94
TRIM28-202ENST00000341753 MMP12P39900 470 aa20.92■□□□□ 0.94
TRIM28-202ENST00000341753 MAPK9P45984 424 aa20.92■□□□□ 0.94
TRIM28-202ENST00000341753 LRRC28Q86X40 367 aaPredicted RBP20.92■□□□□ 0.94
TRIM28-202ENST00000341753 C17orf62Q9BQA9 187 aa20.92■□□□□ 0.94
TRIM28-202ENST00000341753 DPH7Q9BTV6 452 aa20.92■□□□□ 0.94
TRIM28-202ENST00000341753 CHST2Q9Y4C5 530 aa20.92■□□□□ 0.94
TRIM28-202ENST00000341753 MYO10Q9HD67 2058 aa20.92■□□□□ 0.94
TRIM28-202ENST00000341753 A0A0B4J203 849 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 WASH3PC4AMC7 463 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 MPC2O95563 127 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 OMPP47874 163 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 EXOSC2Q13868 293 aaKnown RBP20.91■□□□□ 0.94
TRIM28-202ENST00000341753 ZNF311Q5JNZ3 666 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 HBMQ6B0K9 141 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 RASSF6Q6ZTQ3 369 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 DPPA4Q7L190 304 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 NRMQ8IXM6 262 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 LINC00471Q8N535 108 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 TMEM99Q8N816 258 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 POF1BQ8WVV4 589 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 ZFP3Q96NJ6 502 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 TRMT61BQ9BVS5 477 aaKnown RBP20.91■□□□□ 0.94
TRIM28-202ENST00000341753 RANBP3Q9H6Z4 567 aaPredicted RBP20.91■□□□□ 0.94
TRIM28-202ENST00000341753 ASB6Q9NWX5 421 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 PHF11Q9UIL8 331 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 E9PI62 339 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 TCRBP04435 133 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 POLR2CP19387 275 aaPredicted RBP20.91■□□□□ 0.94
TRIM28-202ENST00000341753 FUT1P19526 365 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 FRKP42685 505 aaPredicted RBP20.91■□□□□ 0.94
TRIM28-202ENST00000341753 SLC25A35Q3KQZ1 300 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 LGALSLQ3ZCW2 172 aaPredicted RBP20.91■□□□□ 0.94
TRIM28-202ENST00000341753 ARHGAP15Q53QZ3 475 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 NDUFAF5Q5TEU4 345 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 PLBD1Q6P4A8 553 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 PARS2Q7L3T8 475 aaKnown RBP20.91■□□□□ 0.94
TRIM28-202ENST00000341753 ADCK2Q7Z695 626 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 UBE3DQ7Z6J8 389 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 ADGRD2Q7Z7M1 963 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 SFTPA1Q8IWL2 248 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 H2AFY2Q9P0M6 372 aaPredicted RBP20.91■□□□□ 0.94
TRIM28-202ENST00000341753 IL36AQ9UHA7 158 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 CACNB4O00305 520 aaPredicted RBP20.91■□□□□ 0.94
TRIM28-202ENST00000341753 OR1F1O43749 312 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 CFDP00746 253 aaPredicted RBP20.91■□□□□ 0.94
TRIM28-202ENST00000341753 THBS2P35442 1172 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 VSX2P58304 361 aaPredicted RBP20.91■□□□□ 0.94
TRIM28-202ENST00000341753 DUSP2Q05923 314 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 TMEM65Q6PI78 240 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 ESPNLQ6ZVH7 1005 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 LUZP2Q86TE4 346 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 NUDT13Q86X67 352 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 EMC7Q9NPA0 242 aa20.91■□□□□ 0.94
TRIM28-202ENST00000341753 C7orf66A4D0T2 115 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 NDUFS4O43181 175 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 CFL1P23528 166 aaKnown RBP20.9■□□□□ 0.94
TRIM28-202ENST00000341753 ACSL1P33121 698 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 SLC3A1Q07837 685 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 OAFQ86UD1 273 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 LRRTM4Q86VH4 590 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 CCDC116Q8IYX3 515 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 OR52N1Q8NH53 320 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 BBS10Q8TAM1 723 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 PIGXQ8TBF5 258 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 TRMT10AQ8TBZ6 339 aaKnown RBP20.9■□□□□ 0.94
TRIM28-202ENST00000341753 SAMD8Q96LT4 415 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 BBS4Q96RK4 519 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 CRISPLD2Q9H0B8 497 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 DPAGT1Q9H3H5 408 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 SLC13A4Q9UKG4 626 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 NUP50Q9UKX7 468 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 MAFFQ9ULX9 164 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 A0A0C4DFX4 3053 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 MTCL1Q9Y4B5 1905 aaKnown RBP20.9■□□□□ 0.94
TRIM28-202ENST00000341753 A0A1W2PPK0 400 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 IGHA1P01876 353 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 FGBP02675 491 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 ACADLP28330 430 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 KHKP50053 298 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 CRYZQ08257 329 aaKnown RBP20.9■□□□□ 0.94
TRIM28-202ENST00000341753 SNTA1Q13424 505 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 TRAM2Q15035 370 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 ZNF77Q15935 545 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 PGGHGQ32M88 737 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 SLC36A2Q495M3 483 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 ZNF805Q5CZA5 627 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 TJAP1Q5JTD0 557 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 SYT9Q86SS6 491 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 SIAH3Q8IW03 269 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 TMEM255BQ8WV15 326 aa20.9■□□□□ 0.94
TRIM28-202ENST00000341753 C12orf66Q96MD2 445 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms