RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 TRAM2Q15035 370 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 ELAVL1Q15717 326 aaKnown RBP12.4□□□□□ -0.42
HMGB1-202ENST00000339872 PDZK1Q5T2W1 519 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 RANBP3LQ86VV4 465 aaPredicted RBP12.4□□□□□ -0.42
HMGB1-202ENST00000339872 NLGN4XQ8N0W4 816 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 MORN4Q8NDC4 146 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 SLC2A12Q8TD20 617 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 SLC38A4Q969I6 547 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 UBE2FQ969M7 185 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 APMAPQ9HDC9 416 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 SLC22A11Q9NSA0 550 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 CBLCQ9ULV8 474 aa12.4□□□□□ -0.42
HMGB1-202ENST00000339872 KMT2EQ8IZD2 1858 aa12.4□□□□□ -0.43
HMGB1-202ENST00000339872 SOX14O95416 240 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 PRG2P13727 222 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 POU1F1P28069 291 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 GRK6P43250 576 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 ZNF136P52737 540 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 SLC37A1P57057 533 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 ESRRGP62508 458 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 LSM11P83369 360 aaKnown RBP eCLIP12.39□□□□□ -0.43
HMGB1-202ENST00000339872 B3GNT8Q7Z7M8 397 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 PPP1R3BQ86XI6 285 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 ENTHD1Q8IYW4 607 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 LINC00471Q8N535 108 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 SGCDQ92629 289 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 DGCR6LQ9BY27 220 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 ARMC7Q9H6L4 198 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 OCIAD1Q9NX40 245 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 SMIM31A0A1B0GVY4 71 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 TTC36A6NLP5 189 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 NTN3O00634 580 aaPredicted RBP12.39□□□□□ -0.43
HMGB1-202ENST00000339872 XPNPEP2O43895 674 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 PRKNO60260 465 aaPredicted RBP12.39□□□□□ -0.43
HMGB1-202ENST00000339872 BCAS1O75363 584 aaPredicted RBP12.39□□□□□ -0.43
HMGB1-202ENST00000339872 CHMP24386 653 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 CRISP1P54107 249 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 FOXL2P58012 376 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 GABARAPL2P60520 117 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 PTGES3Q15185 160 aaKnown RBP12.39□□□□□ -0.43
HMGB1-202ENST00000339872 CLPPQ16740 277 aaPredicted RBP12.39□□□□□ -0.43
HMGB1-202ENST00000339872 NKAIN1Q4KMZ8 207 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 FAAH2Q6GMR7 532 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 ZNF773Q6PK81 442 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 BCORP1Q8N888 145 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 STT3BQ8TCJ2 826 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 SLC41A3Q96GZ6 507 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 G6PC3Q9BUM1 346 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 REV1Q9UBZ9 1251 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 RNF6Q9Y252 685 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 R4GN57 208 aa12.39□□□□□ -0.43
HMGB1-202ENST00000339872 A0A087WUU8 490 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 LNP1A1A4G5 178 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 OR5F1O95221 314 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 NTN1O95631 604 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 DDAH2O95865 285 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 OSMP13725 252 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 MMP11P24347 488 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 CSTF2P33240 577 aaKnown RBP eCLIP12.38□□□□□ -0.43
HMGB1-202ENST00000339872 RORAP35398 523 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 ALDH3B2P48448 385 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 OCA2Q04671 838 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 BROXQ5VW32 411 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 TMEM236Q5W0B7 351 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 AP1ARQ63HQ0 302 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 LAIR1Q6GTX8 287 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 ZNF730Q6ZMV8 503 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 LANCL3Q6ZV70 420 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 GDF7Q7Z4P5 450 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 BMP8AQ7Z5Y6 402 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 C7orf57Q8NEG2 295 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 ZNF721Q8TF20 911 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 ZNF566Q969W8 418 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 LOXL4Q96JB6 756 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 SLC46A1Q96NT5 459 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 CTRCQ99895 268 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 POLR2J3Q9H1A7 115 aaKnown RBP12.38□□□□□ -0.43
HMGB1-202ENST00000339872 ANKRD19PQ9H560 264 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 EFCAB7A8K855 629 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 PTGES3LE9PB15 166 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 H3BN98 237 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 LDOC1O95751 146 aaPredicted RBP12.38□□□□□ -0.43
HMGB1-202ENST00000339872 THY1P04216 161 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 IGKV3-11P04433 115 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 GUSBP08236 651 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 ZGLP1P0C6A0 271 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 CCDC159P0C7I6 412 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 HTR2AP28223 471 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 KRT20P35900 424 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 PLAURQ03405 335 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 SMN1Q16637 294 aaKnown RBP12.38□□□□□ -0.43
HMGB1-202ENST00000339872 RBM44Q6ZP01 1051 aaKnown RBP12.38□□□□□ -0.43
HMGB1-202ENST00000339872 KCTD8Q6ZWB6 473 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 ZER1Q7Z7L7 766 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 NKAIN4Q8IVV8 208 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 OR14A16Q8NHC5 309 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 DAZLQ92904 295 aaKnown RBP12.38□□□□□ -0.43
HMGB1-202ENST00000339872 TMIGD2Q96BF3 282 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 ARSGQ96EG1 525 aa12.38□□□□□ -0.43
HMGB1-202ENST00000339872 GAL3ST4Q96RP7 486 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms