RNA–Protein interactions for RNA: ENST00000339701.7

CSMD3-202, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 10,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-202ENST00000339701 GALNTL6Q49A17 601 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 TCTE1Q5JU00 501 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 TIGD3Q6B0B8 471 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 C19orf48Q6RUI8 117 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 GTF2H5Q6ZYL4 71 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 SH3RF1Q7Z6J0 888 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 CILP2Q8IUL8 1156 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 MISPQ8IVT2 679 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 ELMOD2Q8IZ81 293 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 CNOT9Q92600 299 aaKnown RBP3.12□□□□□ -1.91
CSMD3-202ENST00000339701 GAL3ST3Q96A11 431 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 CMTM7Q96FZ5 175 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 TOE1Q96GM8 510 aaKnown RBP3.12□□□□□ -1.91
CSMD3-202ENST00000339701 FAM46AQ96IP4 442 aaKnown RBP3.12□□□□□ -1.91
CSMD3-202ENST00000339701 TEPSINQ96N21 525 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 SLC2A6Q9UGQ3 507 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 NXT1Q9UKK6 140 aaKnown RBP3.12□□□□□ -1.91
CSMD3-202ENST00000339701 MCTS1Q9ULC4 181 aaKnown RBP3.12□□□□□ -1.91
CSMD3-202ENST00000339701 COPS3Q9UNS2 423 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 MED31Q9Y3C7 131 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 ADAMTS9Q9P2N4 1935 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 LINC01553A4QN01 128 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 GRXCR1A8MXD5 290 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 SH3BGRLO75368 114 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 SIX6O95475 246 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 SNAP29O95721 258 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 TRUB2O95900 331 aaKnown RBP3.12□□□□□ -1.91
CSMD3-202ENST00000339701 ACPPP15309 386 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 KCNE1P15382 129 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 FPR2P25090 351 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 BDKRB2P30411 391 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 MAGEB1P43366 347 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 HTR5AP47898 357 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 LEPRP48357 1165 aaKnown RBP3.12□□□□□ -1.91
CSMD3-202ENST00000339701 RGS19P49795 217 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 ATXN1P54253 815 aaKnown RBP3.12□□□□□ -1.91
CSMD3-202ENST00000339701 KRTDAPP60985 99 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 MXD1Q05195 221 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 DEFB109BQ30KR1 87 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 PABPC1L2AQ5JQF8 200 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 SPIN3Q5JUX0 258 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 TMEM240Q5SV17 173 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 FAM122CQ6P4D5 195 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 FRRS1Q6ZNA5 592 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 IDO2Q6ZQW0 420 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 DET1Q7L5Y6 550 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 PIWIL3Q7Z3Z3 882 aaKnown RBP3.12□□□□□ -1.91
CSMD3-202ENST00000339701 SPRED1Q7Z699 444 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 PHC2Q8IXK0 858 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 IQCF1Q8N6M8 205 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 OR5L1Q8NGL2 311 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 OR2AJ1Q8NGZ0 328 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 OR2T11Q8NH01 316 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 ELSPBP1Q96BH3 223 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 ADAD1Q96M93 576 aaKnown RBP3.12□□□□□ -1.91
CSMD3-202ENST00000339701 OR51J1Q9H342 316 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 MRPS30Q9NP92 439 aaKnown RBP3.12□□□□□ -1.91
CSMD3-202ENST00000339701 OR12D3Q9UGF7 316 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 COQ4Q9Y3A0 265 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 REXO2Q9Y3B8 237 aaKnown RBP3.12□□□□□ -1.91
CSMD3-202ENST00000339701 DOCK10Q96BY6 2186 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 LACTBL1A8MY62 500 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 WNT9AO14904 365 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 PPP1R2P9O14990 202 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 TRBC1P01850 177 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 PNMTP11086 282 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 LIPCP11150 499 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 CSNK2A2P19784 350 aaPredicted RBP3.12□□□□□ -1.91
CSMD3-202ENST00000339701 ITPKAP23677 461 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 KDELR1P24390 212 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 MAZP56270 477 aaKnown RBP3.12□□□□□ -1.91
CSMD3-202ENST00000339701 DCAF7P61962 342 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 LCN6P62502 163 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 RPA4Q13156 261 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 LRP8Q14114 963 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 POU4F3Q15319 338 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 YOD1Q5VVQ6 348 aaPredicted RBP3.12□□□□□ -1.91
CSMD3-202ENST00000339701 GPR107Q5VW38 600 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 LEG1Q6P5S2 330 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 WDR74Q6RFH5 385 aaPredicted RBP3.12□□□□□ -1.91
CSMD3-202ENST00000339701 UNQ9370/PRO34162Q6UXP9 181 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 ZNF584Q8IVC4 421 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 C12orf45Q8N5I9 185 aaPredicted RBP3.12□□□□□ -1.91
CSMD3-202ENST00000339701 OR2T33Q8NG76 320 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 CREB3L4Q8TEY5 395 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 SCRN2Q96FV2 425 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 WDR92Q96MX6 357 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 ZNF641Q96N77 438 aaPredicted RBP3.12□□□□□ -1.91
CSMD3-202ENST00000339701 ULBP1Q9BZM6 244 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 OR52A5Q9H2C5 316 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 KCNK12Q9HB15 430 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 PAQR5Q9NXK6 330 aaPredicted RBP3.12□□□□□ -1.91
CSMD3-202ENST00000339701 B4GALT6Q9UBX8 382 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 RNF6Q9Y252 685 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 ENTPD2Q9Y5L3 495 aa3.12□□□□□ -1.91
CSMD3-202ENST00000339701 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 A0A0A6YYJ9 748 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 ANKRD34BA5PLL1 514 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 ARHGAP33O14559 1287 aa3.11□□□□□ -1.91
CSMD3-202ENST00000339701 JTBO76095 146 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms