RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 RNF148Q8N7C7 305 aa20.33■□□□□ 0.84
SDC3-202ENST00000339394 BTBD10Q9BSF8 475 aa20.33■□□□□ 0.84
SDC3-202ENST00000339394 HOXD1Q9GZZ0 328 aa20.33■□□□□ 0.84
SDC3-202ENST00000339394 QRSL1Q9H0R6 528 aaKnown RBP20.33■□□□□ 0.84
SDC3-202ENST00000339394 SLC25A18Q9H1K4 315 aa20.33■□□□□ 0.84
SDC3-202ENST00000339394 MTHFD2LQ9H903 347 aaPredicted RBP20.33■□□□□ 0.84
SDC3-202ENST00000339394 BCL2L10Q9HD36 194 aa20.33■□□□□ 0.84
SDC3-202ENST00000339394 KLHL1Q9NR64 748 aa20.33■□□□□ 0.84
SDC3-202ENST00000339394 SACM1LQ9NTJ5 587 aa20.33■□□□□ 0.84
SDC3-202ENST00000339394 KCNE5Q9UJ90 142 aa20.33■□□□□ 0.84
SDC3-202ENST00000339394 CNOT11Q9UKZ1 510 aaKnown RBP20.33■□□□□ 0.84
SDC3-202ENST00000339394 PCDHGA10Q9Y5H3 936 aa20.33■□□□□ 0.84
SDC3-202ENST00000339394 A0A0G2JPF8 293 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 FAM220BPB1ANY3 271 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 HNRNPCL2B2RXH8 293 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 HNRNPCL3B7ZW38 293 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 NPIPB9F8W1W9 429 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 GYG2O15488 501 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 FADS1O60427 444 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 UGT2B17O75795 530 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 OXSR1O95747 527 aaPredicted RBP20.32■□□□□ 0.84
SDC3-202ENST00000339394 P04436 131 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 HNRNPCL4P0DMR1 293 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 SFTPCP11686 197 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 ATP12AP54707 1039 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 LY6DQ14210 128 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 ZNF766Q5HY98 468 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 SAMD4BQ5PRF9 694 aaKnown RBP20.32■□□□□ 0.84
SDC3-202ENST00000339394 PRAMEF8Q5VWM4 474 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 PRAMEF7Q5VXH5 474 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 APOOLQ6UXV4 268 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 BNC2Q6ZN30 1099 aaPredicted RBP20.32■□□□□ 0.84
SDC3-202ENST00000339394 FBXW8Q8N3Y1 598 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 HIPK4Q8NE63 616 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 RNF138Q8WVD3 245 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 SCMH1Q96GD3 660 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 C5orf34Q96MH7 638 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 MFRPQ9BY79 579 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 METTL7AQ9H8H3 244 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 PROK2Q9HC23 129 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 DSPPQ9NZW4 1301 aa20.32■□□□□ 0.84
SDC3-202ENST00000339394 ELOVL7A1L3X0 281 aa20.31■□□□□ 0.84
SDC3-202ENST00000339394 ANKRD33BA6NCL7 494 aa20.31■□□□□ 0.84
SDC3-202ENST00000339394 G3V3Y1 287 aa20.31■□□□□ 0.84
SDC3-202ENST00000339394 DNAJA2O60884 412 aa20.31■□□□□ 0.84
SDC3-202ENST00000339394 NGFRP08138 427 aa20.31■□□□□ 0.84
SDC3-202ENST00000339394 RASSF2P50749 326 aa20.31■□□□□ 0.84
SDC3-202ENST00000339394 MAPK14Q16539 360 aa20.31■□□□□ 0.84
SDC3-202ENST00000339394 ERICH5Q6P6B1 374 aa20.31■□□□□ 0.84
SDC3-202ENST00000339394 TMEM81Q6P7N7 255 aa20.31■□□□□ 0.84
SDC3-202ENST00000339394 POGLUT1Q8NBL1 392 aa20.31■□□□□ 0.84
SDC3-202ENST00000339394 GALNT9Q9HCQ5 603 aa20.31■□□□□ 0.84
SDC3-202ENST00000339394 KLRF1Q9NZS2 232 aa20.31■□□□□ 0.84
SDC3-202ENST00000339394 CD300AQ9UGN4 299 aa20.31■□□□□ 0.84
SDC3-202ENST00000339394 ABCG2Q9UNQ0 655 aa20.31■□□□□ 0.84
SDC3-202ENST00000339394 B3GNT3Q9Y2A9 372 aa20.31■□□□□ 0.84
SDC3-202ENST00000339394 PCDHGB6Q9Y5F9 930 aa20.31■□□□□ 0.84
SDC3-202ENST00000339394 CACNA1BQ00975 2339 aa20.31■□□□□ 0.84
SDC3-202ENST00000339394 CENPVL1A0A0U1RR11 272 aa20.3■□□□□ 0.84
SDC3-202ENST00000339394 PRAMEF25A6NGN4 478 aa20.3■□□□□ 0.84
SDC3-202ENST00000339394 NME2P1O60361 137 aa20.3■□□□□ 0.84
SDC3-202ENST00000339394 HPGDP15428 266 aa20.3■□□□□ 0.84
SDC3-202ENST00000339394 NME2P22392 152 aa20.3■□□□□ 0.84
SDC3-202ENST00000339394 AQP1P29972 269 aa20.3■□□□□ 0.84
SDC3-202ENST00000339394 PCGF2P35227 344 aa20.3■□□□□ 0.84
SDC3-202ENST00000339394 PTGDSP41222 190 aa20.3■□□□□ 0.84
SDC3-202ENST00000339394 GPR85P60893 370 aa20.3■□□□□ 0.84
SDC3-202ENST00000339394 SNTA1Q13424 505 aa20.3■□□□□ 0.84
SDC3-202ENST00000339394 ZNF169Q14929 603 aaPredicted RBP20.3■□□□□ 0.84
SDC3-202ENST00000339394 DNAL1Q4LDG9 190 aa20.3■□□□□ 0.84
SDC3-202ENST00000339394 KLHL26Q53HC5 615 aa20.3■□□□□ 0.84
SDC3-202ENST00000339394 GALNTL5Q7Z4T8 443 aa20.3■□□□□ 0.84
SDC3-202ENST00000339394 HMGN2P46Q86SG4 172 aa20.3■□□□□ 0.84
SDC3-202ENST00000339394 MICU2Q8IYU8 434 aa20.3■□□□□ 0.84
SDC3-202ENST00000339394 BBS10Q8TAM1 723 aa20.3■□□□□ 0.84
SDC3-202ENST00000339394 PMM1Q92871 262 aa20.3■□□□□ 0.84
SDC3-202ENST00000339394 WBP1Q96G27 269 aa20.3■□□□□ 0.84
SDC3-202ENST00000339394 KCTD14Q9BQ13 255 aaPredicted RBP20.3■□□□□ 0.84
SDC3-202ENST00000339394 ANGPTL4Q9BY76 406 aa20.3■□□□□ 0.84
SDC3-202ENST00000339394 TBL1XR1Q9BZK7 514 aa20.3■□□□□ 0.84
SDC3-202ENST00000339394 RTN4RQ9BZR6 473 aa20.3■□□□□ 0.84
SDC3-202ENST00000339394 DEPPQ9NTK1 212 aa20.3■□□□□ 0.84
SDC3-202ENST00000339394 ANGPT4Q9Y264 503 aa20.3■□□□□ 0.84
SDC3-202ENST00000339394 SEC23IPQ9Y6Y8 1000 aaKnown RBP20.3■□□□□ 0.84
SDC3-202ENST00000339394 AGAP5A6NIR3 686 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 ALG1L2C9J202 215 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 SCDO00767 359 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 GCM2O75603 506 aaPredicted RBP20.29■□□□□ 0.84
SDC3-202ENST00000339394 CNR1P21554 472 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 CEACAM7Q14002 265 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 VEZF1Q14119 521 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 ZNF141Q15928 474 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 PDZK1Q5T2W1 519 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 MARCH3Q86UD3 253 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 SLC30A8Q8IWU4 369 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 SULF2Q8IWU5 870 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 ARHGAP24Q8N264 748 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 ZNF527Q8NB42 609 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 TMEM178AQ8NBL3 297 aa20.29■□□□□ 0.84
SDC3-202ENST00000339394 FAM156AQ8NDB6 213 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms