RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 SEC23BQ15437 767 aa14.31□□□□□ -0.12
LIMS1-202ENST00000338045 ZNF141Q15928 474 aa14.31□□□□□ -0.12
LIMS1-202ENST00000338045 FGD3Q5JSP0 725 aa14.31□□□□□ -0.12
LIMS1-202ENST00000338045 MRPL2Q5T653 305 aaKnown RBP14.31□□□□□ -0.12
LIMS1-202ENST00000338045 ZNF691Q5VV52 312 aa14.31□□□□□ -0.12
LIMS1-202ENST00000338045 C8orf59Q8N0T1 100 aaPredicted RBP14.31□□□□□ -0.12
LIMS1-202ENST00000338045 CACTIN-AS1Q8N1I8 211 aa14.31□□□□□ -0.12
LIMS1-202ENST00000338045 BCORP1Q8N888 145 aa14.31□□□□□ -0.12
LIMS1-202ENST00000338045 MORN4Q8NDC4 146 aa14.31□□□□□ -0.12
LIMS1-202ENST00000338045 NIPSNAP1Q9BPW8 284 aa14.31□□□□□ -0.12
LIMS1-202ENST00000338045 EDEM2Q9BV94 578 aa14.31□□□□□ -0.12
LIMS1-202ENST00000338045 NUDT9Q9BW91 350 aa14.31□□□□□ -0.12
LIMS1-202ENST00000338045 RIBC2Q9H4K1 309 aa14.31□□□□□ -0.12
LIMS1-202ENST00000338045 EVA1AQ9H8M9 152 aa14.31□□□□□ -0.12
LIMS1-202ENST00000338045 PAPOLBQ9NRJ5 636 aaKnown RBP14.31□□□□□ -0.12
LIMS1-202ENST00000338045 NDRG4Q9ULP0 352 aaKnown RBP14.31□□□□□ -0.12
LIMS1-202ENST00000338045 MYRFQ9Y2G1 1151 aa14.31□□□□□ -0.12
LIMS1-202ENST00000338045 SH3PXD2BA1X283 911 aa14.3□□□□□ -0.12
LIMS1-202ENST00000338045 TRIM64A6NGJ6 449 aa14.3□□□□□ -0.12
LIMS1-202ENST00000338045 IDSB3KWA1 339 aa14.3□□□□□ -0.12
LIMS1-202ENST00000338045 BCKDKO14874 412 aa14.3□□□□□ -0.12
LIMS1-202ENST00000338045 CYC1P08574 325 aa14.3□□□□□ -0.12
LIMS1-202ENST00000338045 DRD5P21918 477 aa14.3□□□□□ -0.12
LIMS1-202ENST00000338045 CLK3P49761 638 aaKnown RBP14.3□□□□□ -0.12
LIMS1-202ENST00000338045 PLAURQ03405 335 aa14.3□□□□□ -0.12
LIMS1-202ENST00000338045 NPRL3Q12980 569 aa14.3□□□□□ -0.12
LIMS1-202ENST00000338045 ILKQ13418 452 aa14.3□□□□□ -0.12
LIMS1-202ENST00000338045 MRPL14Q6P1L8 145 aaKnown RBP14.3□□□□□ -0.12
LIMS1-202ENST00000338045 ISLR2Q6UXK2 745 aa14.3□□□□□ -0.12
LIMS1-202ENST00000338045 LANCL3Q6ZV70 420 aa14.3□□□□□ -0.12
LIMS1-202ENST00000338045 THAP5Q7Z6K1 395 aa14.3□□□□□ -0.12
LIMS1-202ENST00000338045 PARP8Q8N3A8 854 aa14.3□□□□□ -0.12
LIMS1-202ENST00000338045 AQP11Q8NBQ7 271 aa14.3□□□□□ -0.12
LIMS1-202ENST00000338045 OR1N1Q8NGS0 311 aa14.3□□□□□ -0.12
LIMS1-202ENST00000338045 ADIPOR1Q96A54 375 aa14.3□□□□□ -0.12
LIMS1-202ENST00000338045 SPSB2Q99619 263 aa14.3□□□□□ -0.12
LIMS1-202ENST00000338045 PITX2Q99697 317 aa14.3□□□□□ -0.12
LIMS1-202ENST00000338045 ANKRD19PQ9H560 264 aa14.3□□□□□ -0.12
LIMS1-202ENST00000338045 ARMC7Q9H6L4 198 aa14.3□□□□□ -0.12
LIMS1-202ENST00000338045 TMEM9BQ9NQ34 198 aa14.3□□□□□ -0.12
LIMS1-202ENST00000338045 OR10H1Q9Y4A9 318 aa14.3□□□□□ -0.12
LIMS1-202ENST00000338045 FRG2CA6NGY1 282 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 AP3D1O14617 1153 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 CNOT3O75175 753 aaKnown RBP14.29□□□□□ -0.12
LIMS1-202ENST00000338045 ADAP00813 363 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 GASTP01350 101 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 ZNF28P17035 718 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 EPHA2P29317 976 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 RYKP34925 604 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 GPR143P51810 404 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 FOXL2P58012 376 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 TAS2R41P59536 307 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 ISL1P61371 349 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 DCAF7P61962 342 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 IL1RL1Q01638 556 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 EBPQ15125 230 aaKnown RBP14.29□□□□□ -0.12
LIMS1-202ENST00000338045 NNATQ16517 81 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 KCTD21Q4G0X4 260 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 LCN10Q6JVE6 187 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 TTC33Q6PID6 262 aaPredicted RBP14.29□□□□□ -0.12
LIMS1-202ENST00000338045 SHISA6Q6ZSJ9 500 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 GRAMD2AQ8IUY3 354 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 LINC00471Q8N535 108 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 FBLIM1Q8WUP2 373 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 MCHR1Q99705 422 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 CMKLR1Q99788 373 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 PRR14Q9BWN1 585 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 YTHDF1Q9BYJ9 559 aaKnown RBP14.29□□□□□ -0.12
LIMS1-202ENST00000338045 POLR2J2Q9GZM3 115 aaKnown RBP14.29□□□□□ -0.12
LIMS1-202ENST00000338045 POLR2J3Q9H1A7 115 aaKnown RBP14.29□□□□□ -0.12
LIMS1-202ENST00000338045 ZNF556Q9HAH1 456 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 WDR87Q6ZQQ6 2873 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 OR6C76A6NM76 312 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 TNFRSF10AO00220 468 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 FMO6PO60774 539 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 ALOX12BO75342 701 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 CYP7B1O75881 506 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 OR5F1O95221 314 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 HEXBP07686 556 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 CCNYL3P0C7X3 344 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 RFX3P48380 749 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 ATP12AP54707 1039 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 PSMD4P55036 377 aaKnown RBP14.29□□□□□ -0.12
LIMS1-202ENST00000338045 E2F1Q01094 437 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 ST3GAL3Q11203 375 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 APOFQ13790 326 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 ZSWIM7Q19AV6 140 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 ENTPD8Q5MY95 495 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 PDZK1Q5T2W1 519 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 PODNL1Q6PEZ8 512 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 ANKRD37Q7Z713 158 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 C9orf40Q8IXQ3 194 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 ADAMTS16Q8TE57 1224 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 OIT3Q8WWZ8 545 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 LCORQ96JN0 433 aaPredicted RBP14.29□□□□□ -0.12
LIMS1-202ENST00000338045 HRASLS5Q96KN8 279 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 NXF5Q9H1B4 397 aaKnown RBP14.29□□□□□ -0.12
LIMS1-202ENST00000338045 SEMA4GQ9NTN9 838 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 MGAT4BQ9UQ53 548 aa14.29□□□□□ -0.12
LIMS1-202ENST00000338045 HSPE1-MOB4S4R3N1 261 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms