RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ZNF107Q9UII5 783 aaPredicted RBP2.56□□□□□ -2
HMGB1-201ENST00000326004 DUSP12Q9UNI6 340 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 NUDCQ9Y266 331 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 NTNG1Q9Y2I2 539 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 NAALAD2Q9Y3Q0 740 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 RNF115Q9Y4L5 304 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 CLSPNQ9HAW4 1339 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 ADCY9O60503 1353 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 MAP3K5Q99683 1374 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 NCOA2Q15596 1464 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 ARHGAP5Q13017 1502 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 MROH1Q8NDA8 1641 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 TNS1Q9HBL0 1735 aaKnown RBP2.56□□□□□ -2
HMGB1-201ENST00000326004 ZNF646O15015 1829 aaPredicted RBP2.56□□□□□ -2
HMGB1-201ENST00000326004 ATRXP46100 2492 aa2.56□□□□□ -2
HMGB1-201ENST00000326004 FBLL1A6NHQ2 334 aaKnown RBP2.55□□□□□ -2
HMGB1-201ENST00000326004 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.55□□□□□ -2
HMGB1-201ENST00000326004 LGALS8O00214 317 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 ALOX15BO15296 676 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 GRIN2DO15399 1336 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 ABCC5O15440 1437 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 ADAM12O43184 909 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 AKR7A3O95154 331 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 GJB5O95377 273 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 DIRAS3O95661 229 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 WNT2P09544 360 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 CYP11B1P15538 503 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 PZPP20742 1482 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 RFC2P35250 354 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 STK19P49842 368 aaPredicted RBP2.55□□□□□ -2
HMGB1-201ENST00000326004 IST1P53990 364 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 RAG2P55895 527 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 PRKCEQ02156 737 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 SRYQ05066 204 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 ZP4Q12836 540 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 BEND6Q5SZJ8 279 aaPredicted RBP2.55□□□□□ -2
HMGB1-201ENST00000326004 EFCAB6Q5THR3 1501 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 DMKNQ6E0U4 476 aaPredicted RBP2.55□□□□□ -2
HMGB1-201ENST00000326004 IRGCQ6NXR0 463 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 ZNF562Q6V9R5 426 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 GCNT7Q6ZNI0 430 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 PPP1R42Q7Z4L9 355 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 RAI1Q7Z5J4 1906 aaPredicted RBP2.55□□□□□ -2
HMGB1-201ENST00000326004 KIF27Q86VH2 1401 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 SAMD9LQ8IVG5 1584 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 MINDY2Q8NBR6 621 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 GMCL1P1Q8NEA9 526 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 RFESDQ8TAC1 157 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 ZNF671Q8TAW3 534 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 TFB1MQ8WVM0 346 aaKnown RBP2.55□□□□□ -2
HMGB1-201ENST00000326004 ZNF606Q8WXB4 792 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 RREB1Q92766 1687 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 PINX1Q96BK5 328 aaKnown RBP2.55□□□□□ -2
HMGB1-201ENST00000326004 SLC25A36Q96CQ1 311 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 C11orf24Q96F05 449 aaPredicted RBP2.55□□□□□ -2
HMGB1-201ENST00000326004 CARD6Q9BX69 1037 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 RAB17Q9H0T7 212 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 RWDD1Q9H446 243 aaPredicted RBP2.55□□□□□ -2
HMGB1-201ENST00000326004 RPAP3Q9H6T3 665 aaPredicted RBP2.55□□□□□ -2
HMGB1-201ENST00000326004 ARHGAP35Q9NRY4 1499 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 FAM114A2Q9NRY5 505 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 FAM120CQ9NX05 1096 aaKnown RBP2.55□□□□□ -2
HMGB1-201ENST00000326004 SOHLH2Q9NX45 425 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 GHRLQ9UBU3 117 aa2.55□□□□□ -2
HMGB1-201ENST00000326004 CACNA1AO00555 2505 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 PDE4DIPQ5VU43 2346 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 LRRK1Q38SD2 2015 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 CASZ1Q86V15 1759 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 TTC26A0AVF1 554 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 H3BMH7 237 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 SAP18O00422 153 aaKnown RBP2.54□□□□□ -2
HMGB1-201ENST00000326004 PHOX2AO14813 284 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 LCMT2O60294 686 aaKnown RBP2.54□□□□□ -2
HMGB1-201ENST00000326004 RAMP1O60894 148 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 SDC3O75056 442 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 THY1P04216 161 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 CT45A10P0DMU9 189 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 UMPSP11172 480 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 NCF1P14598 390 aaPredicted RBP2.54□□□□□ -2
HMGB1-201ENST00000326004 PGAM2P15259 253 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 DNAJB1P25685 340 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 CCND2P30279 289 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 HMGCLP35914 325 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 MDH1P40925 334 aaKnown RBP2.54□□□□□ -2
HMGB1-201ENST00000326004 MAGEA9P43362 315 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 ARHGDIBP52566 201 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 ARFIP1P53367 373 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 MRPS6P82932 125 aaKnown RBP2.54□□□□□ -2
HMGB1-201ENST00000326004 FUT7Q11130 342 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 DPYSQ14117 519 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 SLC10A1Q14973 349 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 CEBPEQ15744 281 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 CYBRD1Q53TN4 286 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 UTF1Q5T230 341 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 RAET1GQ6H3X3 334 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 KDELC1Q6UW63 502 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 C2orf66Q6UXQ4 117 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 SYVN1Q86TM6 617 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 KLHL30-AS1Q8NEE0 82 aa2.54□□□□□ -2
HMGB1-201ENST00000326004 FBXO30Q8TB52 745 aa2.54□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms