RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 MED9Q9NWA0 146 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 MARCH5Q9NX47 278 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 CLEC4EQ9ULY5 219 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 UNC13BO14795 1591 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 TTC37Q6PGP7 1564 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 ZC3H12DA2A288 527 aaKnown RBP7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 SLCO2B1O94956 709 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 CCR2P41597 374 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 CTSOP43234 321 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 DLX1P56177 255 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 PTPAQ15257 358 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 HMGN3Q15651 99 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 DUSP6Q16828 381 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 NADK2Q4G0N4 442 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 MAP1SQ66K74 1059 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 NRMQ8IXM6 262 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 DMBX1Q8NFW5 382 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 CXorf40AQ8TE69 158 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 SMAP2Q8WU79 429 aaPredicted RBP7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 COL21A1Q96P44 957 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 ANAPC13Q9BS18 74 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 BOCQ9BWV1 1114 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 COQ10BQ9H8M1 238 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 LRTM1Q9HBL6 345 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 TUBD1Q9UJT1 453 aa7.26□□□□□ -1.25
LIMCH1-201ENST00000313860 MYPNQ86TC9 1320 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 OR5K3A6NET4 321 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 LEFTY1O75610 366 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 HAND1O96004 215 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 CT45A10P0DMU9 189 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 RNH1P13489 461 aaKnown RBP7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 ZNF182P17025 639 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 GGT2P36268 569 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 CEBPAP49715 358 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 PSMB3P49720 205 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 CD81P60033 236 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 CRB2Q5IJ48 1285 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 REP15Q6BDI9 236 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 TAC4Q86UU9 113 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 SIRT2Q8IXJ6 389 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 CREB3L4Q8TEY5 395 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 OR51I1Q9H343 314 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 NSUN3Q9H649 340 aaKnown RBP7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 KDM5AP29375 1690 aaKnown RBP7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 ARHGEF5Q12774 1597 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 LRRC3CA6NJW4 275 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 SCELO95171 688 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 SIX6O95475 246 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 FCGR3AP08637 254 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 PABPC4LP0CB38 370 aaKnown RBP7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 BMP3P12645 472 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 DRD2P14416 443 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 TBPP20226 339 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 PRELPP51888 382 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 CLPPQ16740 277 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 CMTM1Q8IZ96 169 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 GOT1L1Q8NHS2 421 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 FNDC9Q8TBE3 224 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 MRGPRDQ8TDS7 321 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 IL1F10Q8WWZ1 152 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 GRAMD2BQ96HH9 432 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 ERGIC2Q96RQ1 377 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 LMF1Q96S06 567 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 MXRA8Q9BRK3 442 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 MAF1Q9H063 256 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 C2orf40Q9H1Z8 148 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 SPG21Q9NZD8 308 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 MRPS33Q9Y291 106 aaKnown RBP7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 NR2E3Q9Y5X4 410 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 ZNF518AQ6AHZ1 1483 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 A6NDN8 102 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 GABARAPH6UMI1 98 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 PLPP1O14494 284 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 SOCS6O14544 535 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 PRKAB2O43741 272 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 GABARAPO95166 117 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 ARSDP51689 593 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 RPS27AP62979 156 aaKnown RBP7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 UBA52P62987 128 aaKnown RBP7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 GRIK5Q16478 980 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 LBHQ53QV2 105 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 MFSD14BQ5SR56 506 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 B3GNTL1Q67FW5 361 aaPredicted RBP7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 TRILQ7L0X0 811 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 KIAA0319LQ8IZA0 1049 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 LINC00471Q8N535 108 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 TMEM217Q8N7C4 229 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 THOC3Q96J01 351 aaKnown RBP7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 CXorf58Q96LI9 332 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 EBPLQ9BY08 206 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 SDCBP2Q9H190 292 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 RBM22Q9NW64 420 aaKnown RBP eCLIP7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 GPR34Q9UPC5 381 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 WASHC3Q9Y3C0 194 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 AGPSO00116 658 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 MSI1O43347 362 aaKnown RBP7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 BCHEP06276 602 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 PAGE3Q5JUK9 113 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 AWAT2Q6E213 333 aa7.25□□□□□ -1.25
LIMCH1-201ENST00000313860 KIAA1324Q6UXG2 1013 aaKnown RBP7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms