RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 ASIC5Q9NY37 505 aa14.78□□□□□ -0.04
LSM1-201ENST00000311351 NOP53Q9NZM5 478 aaKnown RBP14.78□□□□□ -0.04
LSM1-201ENST00000311351 HAO1Q9UJM8 370 aa14.78□□□□□ -0.04
LSM1-201ENST00000311351 ANKRD17O75179 2603 aaKnown RBP14.77□□□□□ -0.04
LSM1-201ENST00000311351 MBD3L4A6NDZ8 208 aaPredicted RBP14.77□□□□□ -0.05
LSM1-201ENST00000311351 MBD3L3A6NE82 208 aaPredicted RBP14.77□□□□□ -0.05
LSM1-201ENST00000311351 MBD3L5A6NJ08 208 aaPredicted RBP14.77□□□□□ -0.05
LSM1-201ENST00000311351 KCNK2O95069 426 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 OXSR1O95747 527 aaPredicted RBP14.77□□□□□ -0.05
LSM1-201ENST00000311351 ANGPTL1O95841 491 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 IL2RAP01589 272 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 ALOX5P09917 674 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 HK1P19367 917 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 SSTR2P30874 369 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 TIMP3P35625 211 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 PRIM2P49643 509 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 DLX5P56178 289 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 DSCR4P56555 118 aaPredicted RBP14.77□□□□□ -0.05
LSM1-201ENST00000311351 CLDN18P56856 261 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 KRTAP10-9P60411 292 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 TLE4Q04727 773 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 SNTB1Q13884 538 aaKnown RBP14.77□□□□□ -0.05
LSM1-201ENST00000311351 RCAN2Q14206 197 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 SPDYE7PQ495Y7 208 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 BEND6Q5SZJ8 279 aaPredicted RBP14.77□□□□□ -0.05
LSM1-201ENST00000311351 RAET1LQ5VY80 246 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 AAGABQ6PD74 315 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 POMZP3Q6PJE2 187 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 DMRTC2Q8IXT2 367 aaPredicted RBP14.77□□□□□ -0.05
LSM1-201ENST00000311351 GATSQ8NAP1 163 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 OR5M1Q8NGP8 315 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 OR5AK3PQ8NH89 298 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 MBD3L2Q8NHZ7 208 aaPredicted RBP14.77□□□□□ -0.05
LSM1-201ENST00000311351 DUSP19Q8WTR2 217 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 CDS1Q92903 461 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 DTNBP1Q96EV8 351 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 CHMP6Q96FZ7 201 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 LURAP1Q96LR2 239 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 DUSP26Q9BV47 211 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 SDHAF3Q9NRP4 125 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 METRNQ9UJH8 293 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 EPB41L3Q9Y2J2 1087 aaPredicted RBP14.77□□□□□ -0.05
LSM1-201ENST00000311351 CCDC168Q8NDH2 2452 aa14.77□□□□□ -0.05
LSM1-201ENST00000311351 CLCA1A8K7I4 914 aa14.76□□□□□ -0.05
LSM1-201ENST00000311351 ZNF708P17019 499 aa14.76□□□□□ -0.05
LSM1-201ENST00000311351 SOAT1P35610 550 aa14.76□□□□□ -0.05
LSM1-201ENST00000311351 CCT3P49368 545 aaKnown RBP14.76□□□□□ -0.05
LSM1-201ENST00000311351 CLK3P49761 638 aaKnown RBP14.76□□□□□ -0.05
LSM1-201ENST00000311351 AGFG1P52594 562 aaKnown RBP14.76□□□□□ -0.05
LSM1-201ENST00000311351 CLDN8P56748 225 aa14.76□□□□□ -0.05
LSM1-201ENST00000311351 C21orf58P58505 322 aa14.76□□□□□ -0.05
LSM1-201ENST00000311351 MAGOHP61326 146 aaKnown RBP14.76□□□□□ -0.05
LSM1-201ENST00000311351 SF3B4Q15427 424 aaKnown RBP eCLIP14.76□□□□□ -0.05
LSM1-201ENST00000311351 PGS1Q32NB8 556 aa14.76□□□□□ -0.05
LSM1-201ENST00000311351 OR4F3Q6IEY1 312 aa14.76□□□□□ -0.05
LSM1-201ENST00000311351 UBQLNLQ8IYU4 475 aa14.76□□□□□ -0.05
LSM1-201ENST00000311351 CLECL1Q8IZS7 167 aa14.76□□□□□ -0.05
LSM1-201ENST00000311351 OR4C3Q8NH37 302 aa14.76□□□□□ -0.05
LSM1-201ENST00000311351 PSMA8Q8TAA3 256 aa14.76□□□□□ -0.05
LSM1-201ENST00000311351 FAM110BQ8TC76 370 aa14.76□□□□□ -0.05
LSM1-201ENST00000311351 ZPLD1Q8TCW7 415 aa14.76□□□□□ -0.05
LSM1-201ENST00000311351 C1GALT1C1Q96EU7 318 aa14.76□□□□□ -0.05
LSM1-201ENST00000311351 C14orf79Q96F83 325 aa14.76□□□□□ -0.05
LSM1-201ENST00000311351 PRPF18Q99633 342 aaKnown RBP14.76□□□□□ -0.05
LSM1-201ENST00000311351 BHLHE41Q9C0J9 482 aaPredicted RBP14.76□□□□□ -0.05
LSM1-201ENST00000311351 NEUROD4Q9HD90 331 aa14.76□□□□□ -0.05
LSM1-201ENST00000311351 MRPS18CQ9Y3D5 142 aaKnown RBP14.76□□□□□ -0.05
LSM1-201ENST00000311351 NPIPA5A0A0B4J1W7 369 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 SHISA8B8ZZ34 492 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 NPIPA7E9PJI5 369 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 DVL2O14641 736 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 CFLARO15519 480 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 NPIPA8P0DM63 369 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 POU3F2P20265 443 aaPredicted RBP14.75□□□□□ -0.05
LSM1-201ENST00000311351 CHMP24386 653 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 RNF144AP50876 292 aaPredicted RBP14.75□□□□□ -0.05
LSM1-201ENST00000311351 DGKQP52824 942 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 HBA1P69905 142 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 POU6F2P78424 691 aaPredicted RBP14.75□□□□□ -0.05
LSM1-201ENST00000311351 GANABQ14697 944 aaKnown RBP14.75□□□□□ -0.05
LSM1-201ENST00000311351 CPEB4Q17RY0 729 aaKnown RBP eCLIP14.75□□□□□ -0.05
LSM1-201ENST00000311351 SMU1Q2TAY7 513 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 LSM12Q3MHD2 195 aaKnown RBP14.75□□□□□ -0.05
LSM1-201ENST00000311351 CDC73Q6P1J9 531 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 ZCCHC12Q6PEW1 402 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 CAMKMTQ7Z624 323 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 ADGRE4PQ86SQ3 457 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 LURAP1LQ8IV03 231 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 CLEC4FQ8N1N0 589 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 OR56A1Q8NGH5 318 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 SFXN5Q8TD22 340 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 TLCD1Q96CP7 247 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 SH3GL2Q99962 352 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 PTGES2Q9H7Z7 377 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 CALHM2Q9HA72 323 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 MEAF6Q9HAF1 191 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 TMBIM4Q9HC24 238 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 GPATCH2Q9NW75 528 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 CLCF1Q9UBD9 225 aa14.75□□□□□ -0.05
LSM1-201ENST00000311351 MARCOQ9UEW3 520 aaPredicted RBP14.75□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms