RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 R3HCC1LQ7Z5L2 792 aaKnown RBP17.63■□□□□ 0.41
LIME1-201ENST00000309546 CNEP1R1Q8N9A8 125 aa17.63■□□□□ 0.41
LIME1-201ENST00000309546 GATSQ8NAP1 163 aa17.63■□□□□ 0.41
LIME1-201ENST00000309546 C1GALT1C1Q96EU7 318 aa17.63■□□□□ 0.41
LIME1-201ENST00000309546 PPP3R2Q96LZ3 170 aa17.63■□□□□ 0.41
LIME1-201ENST00000309546 YIPF4Q9BSR8 244 aa17.63■□□□□ 0.41
LIME1-201ENST00000309546 C1orf50Q9BV19 199 aa17.63■□□□□ 0.41
LIME1-201ENST00000309546 PINK1Q9BXM7 581 aa17.63■□□□□ 0.41
LIME1-201ENST00000309546 PIGMQ9H3S5 423 aa17.63■□□□□ 0.41
LIME1-201ENST00000309546 ACSS1Q9NUB1 689 aaPredicted RBP17.63■□□□□ 0.41
LIME1-201ENST00000309546 ST6GALNAC2Q9UJ37 374 aa17.63■□□□□ 0.41
LIME1-201ENST00000309546 PACSIN3Q9UKS6 424 aa17.63■□□□□ 0.41
LIME1-201ENST00000309546 PLEKHA6Q9Y2H5 1048 aa17.63■□□□□ 0.41
LIME1-201ENST00000309546 ZNF337Q9Y3M9 751 aa17.63■□□□□ 0.41
LIME1-201ENST00000309546 GIMAP1-GIMAP5A0A087WTJ2 511 aa17.62■□□□□ 0.41
LIME1-201ENST00000309546 A0A1W2PNV4 684 aa17.62■□□□□ 0.41
LIME1-201ENST00000309546 OR2M5A3KFT3 312 aa17.62■□□□□ 0.41
LIME1-201ENST00000309546 FAM221AA4D161 298 aa17.62■□□□□ 0.41
LIME1-201ENST00000309546 EMC8O43402 210 aa17.62■□□□□ 0.41
LIME1-201ENST00000309546 SMNDC1O75940 238 aaKnown RBP eCLIP17.62■□□□□ 0.41
LIME1-201ENST00000309546 DDX5P17844 614 aaKnown RBP17.62■□□□□ 0.41
LIME1-201ENST00000309546 FRKP42685 505 aaPredicted RBP17.62■□□□□ 0.41
LIME1-201ENST00000309546 SUCLG1P53597 346 aaKnown RBP17.62■□□□□ 0.41
LIME1-201ENST00000309546 EEFSECP57772 596 aaKnown RBP17.62■□□□□ 0.41
LIME1-201ENST00000309546 PRR5P85299 388 aa17.62■□□□□ 0.41
LIME1-201ENST00000309546 C17orf67Q0P5P2 114 aa17.62■□□□□ 0.41
LIME1-201ENST00000309546 MFSD12Q6NUT3 480 aa17.62■□□□□ 0.41
LIME1-201ENST00000309546 HOMEZQ8IX15 550 aa17.62■□□□□ 0.41
LIME1-201ENST00000309546 COX18Q8N8Q8 333 aa17.62■□□□□ 0.41
LIME1-201ENST00000309546 SLC16A11Q8NCK7 471 aa17.62■□□□□ 0.41
LIME1-201ENST00000309546 AENQ8WTP8 325 aaKnown RBP17.62■□□□□ 0.41
LIME1-201ENST00000309546 FIG4Q92562 907 aa17.62■□□□□ 0.41
LIME1-201ENST00000309546 NINJ1Q92982 152 aa17.62■□□□□ 0.41
LIME1-201ENST00000309546 MTERF3Q96E29 417 aa17.62■□□□□ 0.41
LIME1-201ENST00000309546 GIMAP5Q96F15 307 aa17.62■□□□□ 0.41
LIME1-201ENST00000309546 CHMP6Q96FZ7 201 aa17.62■□□□□ 0.41
LIME1-201ENST00000309546 PIGQQ9BRB3 760 aa17.62■□□□□ 0.41
LIME1-201ENST00000309546 ROPN1BQ9BZX4 212 aaPredicted RBP17.62■□□□□ 0.41
LIME1-201ENST00000309546 ROPN1Q9HAT0 212 aaPredicted RBP17.62■□□□□ 0.41
LIME1-201ENST00000309546 ZCCHC3Q9NUD5 404 aaKnown RBP17.62■□□□□ 0.41
LIME1-201ENST00000309546 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.62■□□□□ 0.41
LIME1-201ENST00000309546 VDAC3Q9Y277 283 aa17.62■□□□□ 0.41
LIME1-201ENST00000309546 V9GYY5 206 aaPredicted RBP17.62■□□□□ 0.41
LIME1-201ENST00000309546 TNFSF12-TNFSF13A0A0A6YY99 330 aa17.61■□□□□ 0.41
LIME1-201ENST00000309546 SHISA8B8ZZ34 492 aa17.61■□□□□ 0.41
LIME1-201ENST00000309546 SCAMP2O15127 329 aaKnown RBP17.61■□□□□ 0.41
LIME1-201ENST00000309546 NDUFB5O43674 189 aa17.61■□□□□ 0.41
LIME1-201ENST00000309546 TNFSF13O75888 250 aa17.61■□□□□ 0.41
LIME1-201ENST00000309546 SLU7O95391 586 aaKnown RBP17.61■□□□□ 0.41
LIME1-201ENST00000309546 ALOX5P09917 674 aa17.61■□□□□ 0.41
LIME1-201ENST00000309546 CREB1P16220 341 aa17.61■□□□□ 0.41
LIME1-201ENST00000309546 CLDN15P56746 228 aa17.61■□□□□ 0.41
LIME1-201ENST00000309546 SIRPAP78324 504 aa17.61■□□□□ 0.41
LIME1-201ENST00000309546 DAZAP2Q15038 168 aaPredicted RBP17.61■□□□□ 0.41
LIME1-201ENST00000309546 POU4F3Q15319 338 aa17.61■□□□□ 0.41
LIME1-201ENST00000309546 DUSP5Q16690 384 aa17.61■□□□□ 0.41
LIME1-201ENST00000309546 ATP6AP1LQ52LC2 224 aa17.61■□□□□ 0.41
LIME1-201ENST00000309546 XKR7Q5GH72 579 aa17.61■□□□□ 0.41
LIME1-201ENST00000309546 OR2A2Q6IF42 318 aa17.61■□□□□ 0.41
LIME1-201ENST00000309546 PPP4R4Q6NUP7 873 aa17.61■□□□□ 0.41
LIME1-201ENST00000309546 EMBQ6PCB8 327 aa17.61■□□□□ 0.41
LIME1-201ENST00000309546 LRIG3Q6UXM1 1119 aa17.61■□□□□ 0.41
LIME1-201ENST00000309546 OR7A2PQ8NGA2 310 aa17.61■□□□□ 0.41
LIME1-201ENST00000309546 HOXB13Q92826 284 aaPredicted RBP17.61■□□□□ 0.41
LIME1-201ENST00000309546 C16orf58Q96GQ5 468 aa17.61■□□□□ 0.41
LIME1-201ENST00000309546 SNX8Q9Y5X2 465 aa17.61■□□□□ 0.41
LIME1-201ENST00000309546 HIVEP1P15822 2718 aa17.61■□□□□ 0.41
LIME1-201ENST00000309546 LINC01387J3KSC0 135 aa17.6■□□□□ 0.41
LIME1-201ENST00000309546 KCNK2O95069 426 aa17.6■□□□□ 0.41
LIME1-201ENST00000309546 OXSR1O95747 527 aaPredicted RBP17.6■□□□□ 0.41
LIME1-201ENST00000309546 DNASE1P24855 282 aa17.6■□□□□ 0.41
LIME1-201ENST00000309546 ARRB2P32121 409 aa17.6■□□□□ 0.41
LIME1-201ENST00000309546 SERPINB5P36952 375 aa17.6■□□□□ 0.41
LIME1-201ENST00000309546 RPL3P39023 403 aaKnown RBP17.6■□□□□ 0.41
LIME1-201ENST00000309546 MAP3K8P41279 467 aa17.6■□□□□ 0.41
LIME1-201ENST00000309546 PRIM2P49643 509 aa17.6■□□□□ 0.41
LIME1-201ENST00000309546 CLDN20P56880 219 aa17.6■□□□□ 0.41
LIME1-201ENST00000309546 EEF1A1P68104 462 aaKnown RBP17.6■□□□□ 0.41
LIME1-201ENST00000309546 PTGR1Q14914 329 aa17.6■□□□□ 0.41
LIME1-201ENST00000309546 CCNJQ5T5M9 372 aa17.6■□□□□ 0.41
LIME1-201ENST00000309546 EEF1A1P5Q5VTE0 462 aa17.6■□□□□ 0.41
LIME1-201ENST00000309546 VWA1Q6PCB0 445 aa17.6■□□□□ 0.41
LIME1-201ENST00000309546 ZAR1Q86SH2 424 aa17.6■□□□□ 0.41
LIME1-201ENST00000309546 FNDC5Q8NAU1 212 aa17.6■□□□□ 0.41
LIME1-201ENST00000309546 OR4C3Q8NH37 302 aa17.6■□□□□ 0.41
LIME1-201ENST00000309546 PPP1R14CQ8TAE6 165 aa17.6■□□□□ 0.41
LIME1-201ENST00000309546 FAM120BQ96EK7 910 aaKnown RBP17.6■□□□□ 0.41
LIME1-201ENST00000309546 ZNF845Q96IR2 970 aaPredicted RBP17.6■□□□□ 0.41
LIME1-201ENST00000309546 C3orf30Q96M34 536 aa17.6■□□□□ 0.41
LIME1-201ENST00000309546 SIRT3Q9NTG7 399 aaPredicted RBP17.6■□□□□ 0.41
LIME1-201ENST00000309546 NTMQ9P121 344 aa17.6■□□□□ 0.41
LIME1-201ENST00000309546 ATP6V1HQ9UI12 483 aa17.6■□□□□ 0.41
LIME1-201ENST00000309546 ZDHHC2Q9UIJ5 367 aa17.6■□□□□ 0.41
LIME1-201ENST00000309546 EDARQ9UNE0 448 aa17.6■□□□□ 0.41
LIME1-201ENST00000309546 IGLV3-32A0A0A0MS00 114 aa17.59■□□□□ 0.41
LIME1-201ENST00000309546 A0A1W2PRB8 838 aa17.59■□□□□ 0.41
LIME1-201ENST00000309546 SH3D21A4FU49 640 aa17.59■□□□□ 0.41
LIME1-201ENST00000309546 ALG1L2C9J202 215 aa17.59■□□□□ 0.41
LIME1-201ENST00000309546 BPGMP07738 259 aa17.59■□□□□ 0.41
LIME1-201ENST00000309546 HPGDP15428 266 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms