RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 CARTPTQ16568 116 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 C22orf42Q6IC83 251 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 MBOAT2Q6ZWT7 520 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 BAHD1Q8TBE0 780 aaPredicted RBP18.69■□□□□ 0.58
VPS53-201ENST00000291074 SLC37A2Q8TED4 501 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 FGF20Q9NP95 211 aaPredicted RBP18.69■□□□□ 0.58
VPS53-201ENST00000291074 INIPQ9NRY2 104 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 TXNL4BQ9NX01 149 aaKnown RBP18.69■□□□□ 0.58
VPS53-201ENST00000291074 TOR4AQ9NXH8 423 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 KLHL3Q9UH77 587 aa18.69■□□□□ 0.58
VPS53-201ENST00000291074 C19orf53Q9UNZ5 99 aaPredicted RBP18.69■□□□□ 0.58
VPS53-201ENST00000291074 KLF4O43474 513 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 OR5F1O95221 314 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 CT62P0C5K7 136 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 CLEC2LP0C7M8 214 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 CPEP16870 476 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 RPS25P62851 125 aaKnown RBP18.68■□□□□ 0.58
VPS53-201ENST00000291074 DEFB110Q30KQ9 67 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 DCST2Q5T1A1 773 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 FIGNL1Q6PIW4 674 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 ZNF620Q6ZNG0 422 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 LHFPL3Q86UP9 236 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 OR4F15Q8NGB8 312 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 PIGUQ9H490 435 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 CAPN10Q9HC96 672 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 CSNK1G3Q9Y6M4 447 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 TMEM221A6NGB7 291 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 C2orf74A8MZ97 194 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 SURF4O15260 269 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 KCNK2O95069 426 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 CDRT1O95170 752 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 AGR2O95994 175 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 TSPAN19P0C672 248 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 LIMS3P0CW19 117 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 LIMS4P0CW20 117 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 HTR2AP28223 471 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 ETV6P41212 452 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 CDH11P55287 796 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 VSX2P58304 361 aaPredicted RBP18.68■□□□□ 0.58
VPS53-201ENST00000291074 YPEL5P62699 121 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 WDR88Q6ZMY6 472 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 GDPGP1Q6ZNW5 385 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 LAX1Q8IWV1 398 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 GPR151Q8TDV0 419 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 ZNF350Q9GZX5 532 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 SP140LQ9H930 580 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 CACYBPQ9HB71 228 aaKnown RBP18.68■□□□□ 0.58
VPS53-201ENST00000291074 MRPS18AQ9NVS2 196 aaKnown RBP18.68■□□□□ 0.58
VPS53-201ENST00000291074 IL20Q9NYY1 176 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 UGT2A1Q9Y4X1 527 aa18.68■□□□□ 0.58
VPS53-201ENST00000291074 A0A075B6Q4 140 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 ZNF10P21506 573 aaPredicted RBP18.67■□□□□ 0.58
VPS53-201ENST00000291074 SRSF5Q13243 272 aaKnown RBP18.67■□□□□ 0.58
VPS53-201ENST00000291074 C1orf61Q13536 156 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 HSDL2Q6YN16 418 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 SYT14Q8NB59 555 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 SAMD8Q96LT4 415 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 TM9SF2Q99805 663 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 SLC30A2Q9BRI3 323 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 SGK494L7N484 410 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 CYR61O00622 381 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 SSX4O60224 188 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 IGHV4-34P06331 123 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 TYRP1P17643 537 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 STAT5AP42229 794 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 DUSP8Q13202 625 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 PGGHGQ32M88 737 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 MRPL2Q5T653 305 aaKnown RBP18.67■□□□□ 0.58
VPS53-201ENST00000291074 COX18Q8N8Q8 333 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 PSD4Q8NDX1 1056 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 OSTF1Q92882 214 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 HPS1Q92902 700 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 PRSS27Q9BQR3 290 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 LYRM4Q9HD34 91 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 CRNNQ9UBG3 495 aaPredicted RBP18.67■□□□□ 0.58
VPS53-201ENST00000291074 FAM183AA6NL82 134 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 LOC110117498-PIK3R3F6TDL0 507 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 AQP9O43315 295 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 TNFP01375 233 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 RORCP51449 518 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 UBE2IP63279 158 aaKnown RBP18.67■□□□□ 0.58
VPS53-201ENST00000291074 CDC20Q12834 499 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 B3GLCTQ6Y288 498 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 LAPTM4BQ86VI4 370 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 ZNF619Q8N2I2 560 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 CSNK1A1LQ8N752 337 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 GPBAR1Q8TDU6 330 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 ASB15Q8WXK1 588 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 RBCK1Q9BYM8 510 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 DPH1Q9BZG8 443 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 SLCO1B1Q9Y6L6 691 aa18.67■□□□□ 0.58
VPS53-201ENST00000291074 GXYLT2A0PJZ3 443 aa18.66■□□□□ 0.58
VPS53-201ENST00000291074 LALBAP00709 142 aa18.66■□□□□ 0.58
VPS53-201ENST00000291074 ATP1B1P05026 303 aa18.66■□□□□ 0.58
VPS53-201ENST00000291074 RFX3P48380 749 aa18.66■□□□□ 0.58
VPS53-201ENST00000291074 EIF2B2P49770 351 aaKnown RBP18.66■□□□□ 0.58
VPS53-201ENST00000291074 ZMAT1Q5H9K5 638 aa18.66■□□□□ 0.58
VPS53-201ENST00000291074 EOGTQ5NDL2 527 aa18.66■□□□□ 0.58
VPS53-201ENST00000291074 AADACL4Q5VUY2 407 aa18.66■□□□□ 0.58
VPS53-201ENST00000291074 DGAT2L6Q6ZPD8 337 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms