RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 GRAMD1BQ3KR37 738 aa11.49□□□□□ -0.57
CD44-203ENST00000278386 CCDC153Q494R4 210 aa11.49□□□□□ -0.57
CD44-203ENST00000278386 VPS26BQ4G0F5 336 aa11.49□□□□□ -0.57
CD44-203ENST00000278386 SHEQ5VZ18 495 aa11.49□□□□□ -0.57
CD44-203ENST00000278386 CLEC6AQ6EIG7 209 aa11.49□□□□□ -0.57
CD44-203ENST00000278386 ZNF474Q6S9Z5 364 aaPredicted RBP11.49□□□□□ -0.57
CD44-203ENST00000278386 ZNF551Q7Z340 670 aaPredicted RBP11.49□□□□□ -0.57
CD44-203ENST00000278386 TRIM46Q7Z4K8 759 aa11.49□□□□□ -0.57
CD44-203ENST00000278386 GALNT10Q86SR1 603 aa11.49□□□□□ -0.57
CD44-203ENST00000278386 CNPY4Q8N129 248 aa11.49□□□□□ -0.57
CD44-203ENST00000278386 METTL25Q8N6Q8 603 aa11.49□□□□□ -0.57
CD44-203ENST00000278386 ZFP28Q8NHY6 868 aa11.49□□□□□ -0.57
CD44-203ENST00000278386 GPR151Q8TDV0 419 aa11.49□□□□□ -0.57
CD44-203ENST00000278386 DUSP19Q8WTR2 217 aa11.49□□□□□ -0.57
CD44-203ENST00000278386 SLC9A6Q92581 669 aa11.49□□□□□ -0.57
CD44-203ENST00000278386 PTGDR2Q9Y5Y4 395 aa11.49□□□□□ -0.57
CD44-203ENST00000278386 TTC36A6NLP5 189 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 DEFB108AA8MXU0 73 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 C16orf97H3BN30 126 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 KIF2AO00139 706 aaPredicted RBP11.48□□□□□ -0.57
CD44-203ENST00000278386 SIAH2O43255 324 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 EMC8O43402 210 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 RGS14O43566 566 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 AKAP10O43572 662 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 PLGP00747 810 aaPredicted RBP11.48□□□□□ -0.57
CD44-203ENST00000278386 IGKV1D-16P01601 117 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 INHBBP09529 407 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 PRPS2P11908 318 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 CRYGSP22914 178 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 EIF1AXP47813 144 aaKnown RBP11.48□□□□□ -0.57
CD44-203ENST00000278386 PRKAG1P54619 331 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 RPL38P63173 70 aaKnown RBP11.48□□□□□ -0.57
CD44-203ENST00000278386 LTBQ06643 244 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 C17orf67Q0P5P2 114 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 CLEC9AQ6UXN8 241 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 CXorf67Q86X51 503 aaPredicted RBP11.48□□□□□ -0.57
CD44-203ENST00000278386 KRTAP1-3Q8IUG1 177 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 GATSQ8NAP1 163 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 NUP43Q8NFH3 380 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 CLHC1Q8NHS4 586 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 KIF18AQ8NI77 898 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.48□□□□□ -0.57
CD44-203ENST00000278386 UBLCP1Q8WVY7 318 aaPredicted RBP11.48□□□□□ -0.57
CD44-203ENST00000278386 JADE3Q92613 823 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 CIDECQ96AQ7 238 aaPredicted RBP11.48□□□□□ -0.57
CD44-203ENST00000278386 PPCDCQ96CD2 204 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 EGLN2Q96KS0 407 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 KLHL4Q9C0H6 718 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 RNF122Q9H9V4 155 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 LRTM1Q9HBL6 345 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 TNFRSF12AQ9NP84 129 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 ELOVL5Q9NYP7 299 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 TAS2R7Q9NYW3 318 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 STOML1Q9UBI4 398 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 CLEC4AQ9UMR7 237 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 WBP11Q9Y2W2 641 aaKnown RBP11.48□□□□□ -0.57
CD44-203ENST00000278386 EMC9Q9Y3B6 208 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 AP4B1Q9Y6B7 739 aa11.48□□□□□ -0.57
CD44-203ENST00000278386 SLC28A1O00337 649 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 COPEO14579 308 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 NDUFB5O43674 189 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 PLIN3O60664 434 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 AQP8O94778 261 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 OXSR1O95747 527 aaPredicted RBP11.47□□□□□ -0.57
CD44-203ENST00000278386 IFI6P09912 130 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 CD8BP10966 210 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 NEFHP12036 1026 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 ZNF17P17021 662 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 FPR1P21462 350 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 CCT5P48643 541 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 ZNF41P51814 821 aaPredicted RBP11.47□□□□□ -0.57
CD44-203ENST00000278386 CTBP2P56545 445 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 DNAJB13P59910 316 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 PRR5P85299 388 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 GLYR1Q49A26 553 aaPredicted RBP11.47□□□□□ -0.57
CD44-203ENST00000278386 ZNF385BQ569K4 471 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 LIPMQ5VYY2 423 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 ANKRD34AQ69YU3 496 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 FIGNL1Q6PIW4 674 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 FAM214BQ7L5A3 538 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 ZNF610Q8N9Z0 462 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 PIGTQ969N2 578 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 ZBED6CLQ96FA7 236 aaPredicted RBP11.47□□□□□ -0.57
CD44-203ENST00000278386 PERPQ96FX8 193 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 CHMP6Q96FZ7 201 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 SH3YL1Q96HL8 342 aaPredicted RBP11.47□□□□□ -0.57
CD44-203ENST00000278386 MS4A4EQ96PG1 132 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 TSSK3Q96PN8 268 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 CCT7Q99832 543 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 TXLNGYQ9BZA5 131 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 IQCGQ9H095 443 aaKnown RBP11.47□□□□□ -0.57
CD44-203ENST00000278386 C12orf65Q9H3J6 166 aaKnown RBP11.47□□□□□ -0.57
CD44-203ENST00000278386 C1orf109Q9NX04 203 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 SH3BP4Q9P0V3 963 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 MID2Q9UJV3 735 aa11.47□□□□□ -0.57
CD44-203ENST00000278386 MCTS1Q9ULC4 181 aaKnown RBP11.47□□□□□ -0.57
CD44-203ENST00000278386 NIPBLQ6KC79 2804 aaeCLIP11.46□□□□□ -0.57
CD44-203ENST00000278386 IGLV3-32A0A0A0MS00 114 aa11.46□□□□□ -0.57
CD44-203ENST00000278386 AZIN1O14977 448 aa11.46□□□□□ -0.57
CD44-203ENST00000278386 NKX2-2O95096 273 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms