RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 EPPINO95925 133 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 ASGR2P07307 311 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 GLULP15104 373 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 UQCRC1P31930 480 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 POU6F2P78424 691 aaPredicted RBP11.84□□□□□ -0.51
LIG1-201ENST00000263274 SIM1P81133 766 aaPredicted RBP11.84□□□□□ -0.51
LIG1-201ENST00000263274 LSMEM1Q8N8F7 131 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 KCT2Q8NC54 265 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 MORN4Q8NDC4 146 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 SIMC1Q8NDZ2 872 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 OR4Q3Q8NH05 313 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 WDFY2Q96P53 400 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 MCOLN1Q9GZU1 580 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 MKRN2Q9H000 416 aaKnown RBP11.84□□□□□ -0.51
LIG1-201ENST00000263274 ABCG5Q9H222 651 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 WDR26Q9H7D7 661 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 B3GAT2Q9NPZ5 323 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 SHISA3A0PJX4 238 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 MID1O15344 667 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 HIST1H1TP22492 207 aaPredicted RBP11.84□□□□□ -0.51
LIG1-201ENST00000263274 PDX1P52945 283 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 EPHA5P54756 1037 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 PRDX1Q06830 199 aaKnown RBP11.84□□□□□ -0.51
LIG1-201ENST00000263274 FAPQ12884 760 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 BCL2L15Q5TBC7 163 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 CXXC5Q7LFL8 322 aaKnown RBP11.84□□□□□ -0.51
LIG1-201ENST00000263274 OR51L1Q8NGJ5 315 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 CAMK1GQ96NX5 476 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 ARHGAP9Q9BRR9 750 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 PCBD2Q9H0N5 130 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 PELI2Q9HAT8 420 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 ENAMQ9NRM1 1142 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 RBFOX1Q9NWB1 397 aaKnown RBP11.84□□□□□ -0.51
LIG1-201ENST00000263274 WDR45Q9Y484 360 aa11.84□□□□□ -0.51
LIG1-201ENST00000263274 CLTBP09497 229 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 REEP5Q00765 189 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 PCDH1Q08174 1060 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 TSPAN31Q12999 210 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 TPBGQ13641 420 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 EFR3AQ14156 821 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 CDC73Q6P1J9 531 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 QSOX2Q6ZRP7 698 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 SYT9Q86SS6 491 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 GALNT6Q8NCL4 622 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 GRHL3Q8TE85 626 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 CDS1Q92903 461 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 SLC41A3Q96GZ6 507 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 PAWRQ96IZ0 340 aaKnown RBP11.83□□□□□ -0.52
LIG1-201ENST00000263274 MSLNLQ96KJ4 702 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 IFT27Q9BW83 186 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 BTBD1Q9H0C5 482 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 HINT3Q9NQE9 182 aaKnown RBP11.83□□□□□ -0.52
LIG1-201ENST00000263274 KCNN3Q9UGI6 736 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 CNTRLQ7Z7A1 2325 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 CACNA1IQ9P0X4 2223 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 A0A0G2JPF8 293 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 A0A1W2PP55 124 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 IRGMA1A4Y4 181 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 HNRNPCL2B2RXH8 293 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 HNRNPCL3B7ZW38 293 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 MAGEB4O15481 346 aaPredicted RBP11.83□□□□□ -0.52
LIG1-201ENST00000263274 CHST10O43529 356 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 HNRNPCL4P0DMR1 293 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 DRD2P14416 443 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 ELK1P19419 428 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 SRP9P49458 86 aaKnown RBP11.83□□□□□ -0.52
LIG1-201ENST00000263274 SGCGQ13326 291 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 FAM205BPQ63HN1 556 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 RDH10Q8IZV5 341 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 HDDC3Q8N4P3 179 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 OR2T33Q8NG76 320 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 OR52L1Q8NGH7 329 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 OSTF1Q92882 214 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 NARFLQ9H6Q4 476 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 SPHK1Q9NYA1 384 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 NFKBIL1Q9UBC1 381 aaPredicted RBP11.83□□□□□ -0.52
LIG1-201ENST00000263274 CHD7Q9P2D1 2997 aa11.83□□□□□ -0.52
LIG1-201ENST00000263274 TSPAN11A1L157 253 aa11.82□□□□□ -0.52
LIG1-201ENST00000263274 MAN2B1O00754 1011 aa11.82□□□□□ -0.52
LIG1-201ENST00000263274 EMC8O43402 210 aa11.82□□□□□ -0.52
LIG1-201ENST00000263274 NOS1APO75052 506 aaPredicted RBP11.82□□□□□ -0.52
LIG1-201ENST00000263274 PRG2P13727 222 aa11.82□□□□□ -0.52
LIG1-201ENST00000263274 EN2P19622 333 aaPredicted RBP11.82□□□□□ -0.52
LIG1-201ENST00000263274 FUT5Q11128 374 aa11.82□□□□□ -0.52
LIG1-201ENST00000263274 EIF2B5Q13144 721 aaKnown RBP11.82□□□□□ -0.52
LIG1-201ENST00000263274 ADAM15Q13444 863 aa11.82□□□□□ -0.52
LIG1-201ENST00000263274 RPTNQ6XPR3 784 aa11.82□□□□□ -0.52
LIG1-201ENST00000263274 AMIGO1Q86WK6 493 aa11.82□□□□□ -0.52
LIG1-201ENST00000263274 FAM109AQ8N4B1 249 aa11.82□□□□□ -0.52
LIG1-201ENST00000263274 ESX1Q8N693 406 aa11.82□□□□□ -0.52
LIG1-201ENST00000263274 MRPL43Q8N983 215 aaKnown RBP11.82□□□□□ -0.52
LIG1-201ENST00000263274 BEST4Q8NFU0 473 aa11.82□□□□□ -0.52
LIG1-201ENST00000263274 PINK1Q9BXM7 581 aa11.82□□□□□ -0.52
LIG1-201ENST00000263274 RSPH9Q9H1X1 276 aaPredicted RBP11.82□□□□□ -0.52
LIG1-201ENST00000263274 MED28Q9H204 178 aa11.82□□□□□ -0.52
LIG1-201ENST00000263274 ATP13A2Q9NQ11 1180 aa11.82□□□□□ -0.52
LIG1-201ENST00000263274 LOC105369274A0A096LPK9 316 aa11.82□□□□□ -0.52
LIG1-201ENST00000263274 TMEM129A0AVI4 362 aa11.82□□□□□ -0.52
LIG1-201ENST00000263274 NARSO43776 548 aaKnown RBP11.82□□□□□ -0.52
LIG1-201ENST00000263274 ARSBP15848 533 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms