RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 J3KTA2 159 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 WWP2O00308 870 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 TOX3O15405 576 aaPredicted RBP10.79□□□□□ -0.68
VPS4A-201ENST00000254950 HCRTR1O43613 425 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 ABCB7O75027 752 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 FOLR1P15328 257 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 HK1P19367 917 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 ELK4P28324 431 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 PLGLB1Q02325 96 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 SLC14A1Q13336 389 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 ENTPD8Q5MY95 495 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 ZNF773Q6PK81 442 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 MCEMP1Q8IX19 187 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 OR1L3Q8NH93 324 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 CNIH3Q8TBE1 160 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 TMEM239Q8WW34 195 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 PMM1Q92871 262 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 TSLPQ969D9 159 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 DACT3Q96B18 629 aaPredicted RBP10.79□□□□□ -0.68
VPS4A-201ENST00000254950 TUBA8Q9NY65 449 aaPredicted RBP10.79□□□□□ -0.68
VPS4A-201ENST00000254950 IKZF2Q9UKS7 526 aa10.79□□□□□ -0.68
VPS4A-201ENST00000254950 ZNF99A8MXY4 864 aaPredicted RBP10.78□□□□□ -0.68
VPS4A-201ENST00000254950 PCDH17O14917 1159 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 TRIM3O75382 744 aaPredicted RBP10.78□□□□□ -0.68
VPS4A-201ENST00000254950 ALPLP05186 524 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 ZNF26P17031 533 aaPredicted RBP10.78□□□□□ -0.68
VPS4A-201ENST00000254950 SLC9A3P48764 834 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 PCBP4P57723 403 aaKnown RBP10.78□□□□□ -0.68
VPS4A-201ENST00000254950 RAB15P59190 212 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 COL19A1Q14993 1142 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 PODNL1Q6PEZ8 512 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 OGFOD3Q6PK18 319 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 PAPD5Q8NDF8 572 aaKnown RBP10.78□□□□□ -0.68
VPS4A-201ENST00000254950 OR4D9Q8NGE8 314 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 SNX33Q8WV41 574 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 NANSQ9NR45 359 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 PCDHGA8Q9Y5G5 932 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 TCRBV5S2A0A599 114 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 XPNPEP2O43895 674 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 CDC40O60508 579 aaKnown RBP eCLIP10.78□□□□□ -0.68
VPS4A-201ENST00000254950 TRAPPC6AO75865 159 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 P04436 131 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 PNMTP11086 282 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 CBLP22681 906 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 PSMA1P25786 263 aaKnown RBP10.78□□□□□ -0.68
VPS4A-201ENST00000254950 ITGA3P26006 1051 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 GSTT1P30711 240 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 SNTA1Q13424 505 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 ABHD17BQ5VST6 288 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 WDR74Q6RFH5 385 aaPredicted RBP10.78□□□□□ -0.68
VPS4A-201ENST00000254950 OPN5Q6U736 354 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 SATL1Q86VE3 508 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 SARGQ9BW04 601 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 PCDHGB7Q9Y5F8 929 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 MEN1O00255 615 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 PLOD2O00469 737 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 B4GAT1O43505 415 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 TFPTP0C1Z6 253 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 CCDC159P0C7I6 412 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 ICAM2P13598 275 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 CD47Q08722 323 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 ARHGAP11BQ3KRB8 267 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 HMBOX1Q6NT76 420 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 ULK3Q6PHR2 472 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 LAPTM4BQ86VI4 370 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 OR6T1Q8NGN1 323 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 SLCO4A1Q96BD0 722 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 C1GALT1C1Q96EU7 318 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 SLAMF7Q9NQ25 335 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 KLHL1Q9NR64 748 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 PCDHGA5Q9Y5G8 931 aa10.78□□□□□ -0.68
VPS4A-201ENST00000254950 DAPL1A0PJW8 107 aa10.77□□□□□ -0.68
VPS4A-201ENST00000254950 C7orf72A4D263 438 aa10.77□□□□□ -0.68
VPS4A-201ENST00000254950 A6NCN8 305 aa10.77□□□□□ -0.68
VPS4A-201ENST00000254950 SERINC4A6NH21 518 aa10.77□□□□□ -0.68
VPS4A-201ENST00000254950 TMCC2O75069 709 aa10.77□□□□□ -0.68
VPS4A-201ENST00000254950 LSSP48449 732 aa10.77□□□□□ -0.68
VPS4A-201ENST00000254950 PON3Q15166 354 aa10.77□□□□□ -0.68
VPS4A-201ENST00000254950 C3orf38Q5JPI3 329 aa10.77□□□□□ -0.68
VPS4A-201ENST00000254950 MED25Q71SY5 747 aa10.77□□□□□ -0.68
VPS4A-201ENST00000254950 P2RY8Q86VZ1 359 aa10.77□□□□□ -0.68
VPS4A-201ENST00000254950 GHDCQ8N2G8 530 aa10.77□□□□□ -0.68
VPS4A-201ENST00000254950 NUAK2Q9H093 628 aa10.77□□□□□ -0.68
VPS4A-201ENST00000254950 SLITRK2Q9H156 845 aa10.77□□□□□ -0.68
VPS4A-201ENST00000254950 CNIH4Q9P003 139 aa10.77□□□□□ -0.68
VPS4A-201ENST00000254950 TNFRSF10DQ9UBN6 386 aa10.77□□□□□ -0.68
VPS4A-201ENST00000254950 PCDHGB1Q9Y5G3 927 aa10.77□□□□□ -0.68
VPS4A-201ENST00000254950 PNMA8CA0A1B0GUJ8 204 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 TCN2P20062 427 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 OR1Q1Q15612 314 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 NADK2Q4G0N4 442 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 HIST2H2ABQ8IUE6 130 aaPredicted RBP10.77□□□□□ -0.69
VPS4A-201ENST00000254950 ERMAPQ96PL5 475 aaPredicted RBP10.77□□□□□ -0.69
VPS4A-201ENST00000254950 CDADC1Q9BWV3 514 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 POLR2J2Q9GZM3 115 aaKnown RBP10.77□□□□□ -0.69
VPS4A-201ENST00000254950 ZNF696Q9H7X3 374 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 RLIMQ9NVW2 624 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 PILRBQ9UKJ0 227 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 LOXL2Q9Y4K0 774 aa10.77□□□□□ -0.69
VPS4A-201ENST00000254950 N6AMT1Q9Y5N5 214 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms