RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 CNTN4Q8IWV2 1026 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 MREGQ8N565 214 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF781Q8N8C0 355 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 EXD3Q8N9H8 876 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 OR5D14Q8NGL3 314 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 RSPRY1Q96DX4 576 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 TPT1P8Q9HAU6 139 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 CD248Q9HCU0 757 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 ITGB4P16144 1822 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 SLC9B1P1A6NJY1 282 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 SLC22A31A6NKX4 558 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 SGK494L7N484 410 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 GFRA2O00451 464 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 EDF1O60869 148 aaKnown RBP5.8□□□□□ -1.48
SCN1A-217ENST00000637988 TIA1P31483 386 aaKnown RBP eCLIP5.8□□□□□ -1.48
SCN1A-217ENST00000637988 IL2RGP31785 369 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 DEFB110Q30KQ9 67 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 YOD1Q5VVQ6 348 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-217ENST00000637988 TMEM211Q6ICI0 200 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 LRRC55Q6ZSA7 311 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 SNX29P2Q8IUI4 249 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 VWA5B2Q8N398 1253 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 OR8K3Q8NH51 312 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 TNFRSF25Q93038 417 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 POTEKPQ9BYX7 375 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 FBXL3Q9UKT7 428 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 ECM29Q5VYK3 1845 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 FAAHO00519 579 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 SHOX2O60902 331 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-217ENST00000637988 IFNA7P01567 189 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 MRPL3P09001 348 aaKnown RBP5.8□□□□□ -1.48
SCN1A-217ENST00000637988 RAB3AP20336 220 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 KITLGP21583 273 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 GSK3BP49841 420 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 P2RX1P51575 399 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 IKZF1Q13422 519 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 IRF4Q15306 451 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 MEP1AQ16819 746 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 TMEM25Q86YD3 366 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 FAM109AQ8N4B1 249 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 CLDN19Q8N6F1 224 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 GLIS3Q8NEA6 775 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 OR1N1Q8NGS0 311 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 C3orf49Q96BT1 292 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 MALSU1Q96EH3 234 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 PITHD1Q9GZP4 211 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-217ENST00000637988 COL16A1Q07092 1604 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-217ENST00000637988 GALR3O60755 368 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-217ENST00000637988 IFNA17P01571 189 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF44P15621 663 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 GNB3P16520 340 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 IDUAP35475 653 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 ACVR1BP36896 505 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 MMP12P39900 470 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 MARCKSL1P49006 195 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 CX3CR1P49238 355 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 TGFBIQ15582 683 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF648Q5T619 568 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-217ENST00000637988 C17orf99Q6UX52 265 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF662Q6ZS27 426 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 SLC16A14Q7RTX9 510 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 COMTD1Q86VU5 262 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 TCEAL8Q8IYN2 117 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 FBXL14Q8N1E6 418 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 MAFIPQ8WZ33 124 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 HTRA1Q92743 480 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 RNPEPL1Q9HAU8 725 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 MKLN1Q9UL63 735 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 CENPBD1B2RD01 187 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 M0QX08 132 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 CCNKO75909 580 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 DCNP07585 359 aaKnown RBP5.8□□□□□ -1.48
SCN1A-217ENST00000637988 CD48P09326 243 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 SLC2A5P22732 501 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 CNR2P34972 360 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 CSNK1EP49674 416 aaKnown RBP5.8□□□□□ -1.48
SCN1A-217ENST00000637988 SLC35A1P78382 337 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 RIPPLY1Q0D2K3 151 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF684Q5T5D7 378 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 ZNF765Q7L2R6 523 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 FUKQ8N0W3 1084 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 MARVELD2Q8N4S9 558 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 TEX29Q8N6K0 151 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 OR51Q1Q8NH59 317 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 OR1S1Q8NH92 325 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 CASTOR1Q8WTX7 329 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 KAZALD1Q96I82 304 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 ARRDC1-AS1Q9H2J1 176 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 SARDHQ9UL12 918 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 ANKRD61A6NGH8 418 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 OR6C70A6NIJ9 312 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 TOR1BO14657 336 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 SRPX2O60687 465 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-217ENST00000637988 SCO1O75880 301 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 RBBP9O75884 186 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 PRLP01236 227 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 CD72P21854 359 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 CLDN2P57739 230 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 TAS2R39P59534 338 aa5.8□□□□□ -1.48
SCN1A-217ENST00000637988 TAS2R20P59543 309 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms