RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, human

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UPF1-208	ENST00000600012	PLOD2	O00469	737 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	GSTA4	O15217	222 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	ENTPD5	O75356	428 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	TNFRSF21	O75509	655 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	BCAS2	O75934	225 aa	Predicted RBP	11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	HMGN2	P05204	90 aa	Known RBP	11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	MATN1	P21941	496 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	KHK	P50053	298 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	DSTN	P60981	165 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	ACTR3	P61158	418 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	ADORA2A-AS1	P86434	159 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	TRAP1	Q12931	704 aa	Known RBP	11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	FADD	Q13158	208 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	DUSP8	Q13202	625 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	TUBA3C	Q13748	450 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	C3AR1	Q16581	482 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	MEP1A	Q16819	746 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	KRTCAP3	Q53RY4	240 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	FCRLB	Q6BAA4	426 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	TUBA3E	Q6PEY2	450 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	WDR53	Q7Z5U6	358 aa	Predicted RBP	11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	ANKRD37	Q7Z713	158 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	OR2L13	Q8N349	312 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	VWA5B2	Q8N398	1253 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	AMER2	Q8N7J2	671 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	MDS2	Q8NDY4	140 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	BHLHE22	Q8NFJ8	381 aa	Predicted RBP	11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	OR5D16	Q8NGK9	328 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	M1AP	Q8TC57	530 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	FIG4	Q92562	907 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	JADE3	Q92613	823 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	RAB8B	Q92930	207 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	RIT1	Q92963	219 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	MAL2	Q969L2	176 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	GIMAP5	Q96F15	307 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	RBM18	Q96H35	190 aa	Known RBP	11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	GPR137	Q96N19	417 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	MS4A4E	Q96PG1	132 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	UTP23	Q9BRU9	249 aa	Known RBP	11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	PELO	Q9BRX2	385 aa	Known RBP	11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	CNPPD1	Q9BV87	410 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	CXorf21	Q9HAI6	301 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	TINAG	Q9UJW2	476 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	ERVK-19	Q9WJR5	959 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	FBN2	P35556	2912 aa		11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	ANKRD17	O75179	2603 aa	Known RBP	11.69	□□□□□ -0.54
UPF1-208	ENST00000600012	PDZD2	O15018	2839 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	NIN	Q8N4C6	2090 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012		A0A087WV62	115 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	CXCR6	O00574	342 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	SLITRK5	O94991	958 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	STAMBP	O95630	424 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	CBX7	O95931	251 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	OR12D1	P0DN82	309 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	CD46	P15529	392 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	TNNI3	P19429	210 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	GGT1	P19440	569 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	SSTR4	P31391	388 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	RIPPLY3	P57055	190 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	ALDH6A1	Q02252	535 aa	Known RBP	11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	MAP4K2	Q12851	820 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	ZNF267	Q14586	743 aa	Predicted RBP	11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	OR1C1	Q15619	314 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	NSDHL	Q15738	373 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	ADRM1	Q16186	407 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	FXN	Q16595	210 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	VMAC	Q2NL98	169 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	GLYAT	Q6IB77	296 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	LCN8	Q6JVE9	175 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	ERICH5	Q6P6B1	374 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	BHLHB9	Q6PI77	547 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	PAPD4	Q6PIY7	484 aa	Known RBP	11.68	□□□□□ -0.54
UPF1-208	ENST00000600012		Q6ZPB1	254 aa	Predicted RBP	11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	DHFR2	Q86XF0	187 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	SLC5A8	Q8N695	610 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	TMEM178A	Q8NBL3	297 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	FAM98A	Q8NCA5	519 aa	Known RBP	11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	PLPP5	Q8NEB5	264 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	OR52R1	Q8NGF1	315 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	NFKBID	Q8NI38	313 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	NCLN	Q969V3	563 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	CTHRC1	Q96CG8	243 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	SCMH1	Q96GD3	660 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	SIGLEC12	Q96PQ1	595 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	LPAR4	Q99677	370 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	SPATA9	Q9BWV2	254 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	MUC13	Q9H3R2	512 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	MMP25	Q9NPA2	562 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	KLHL1	Q9NR64	748 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	NTM	Q9P121	344 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	ACTR3B	Q9P1U1	418 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	BCAP29	Q9UHQ4	241 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	ZNF639	Q9UID6	485 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	MAGEL2	Q9UJ55	1249 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	FAF1	Q9UNN5	650 aa	Predicted RBP	11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	C19orf53	Q9UNZ5	99 aa	Predicted RBP	11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	ZNF835	Q9Y2P0	537 aa		11.68	□□□□□ -0.54
UPF1-208	ENST00000600012	C17orf105	B2RV13	164 aa		11.67	□□□□□ -0.54
UPF1-208	ENST00000600012	HMGN4	O00479	90 aa		11.67	□□□□□ -0.54
UPF1-208	ENST00000600012	PLOD3	O60568	738 aa		11.67	□□□□□ -0.54

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