RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 Q6ZSR9 355 aa12.95□□□□□ -0.34
VMP1-206ENST00000587945 IKBIPQ70UQ0 350 aa12.95□□□□□ -0.34
VMP1-206ENST00000587945 CHMP1BQ7LBR1 199 aa12.95□□□□□ -0.34
VMP1-206ENST00000587945 GALNT10Q86SR1 603 aa12.95□□□□□ -0.34
VMP1-206ENST00000587945 EXOC3L1Q86VI1 746 aa12.95□□□□□ -0.34
VMP1-206ENST00000587945 TGIF2LYQ8IUE0 185 aa12.95□□□□□ -0.34
VMP1-206ENST00000587945 CNPY4Q8N129 248 aa12.95□□□□□ -0.34
VMP1-206ENST00000587945 CNEP1R1Q8N9A8 125 aa12.95□□□□□ -0.34
VMP1-206ENST00000587945 CHDHQ8NE62 594 aaPredicted RBP12.95□□□□□ -0.34
VMP1-206ENST00000587945 CLHC1Q8NHS4 586 aa12.95□□□□□ -0.34
VMP1-206ENST00000587945 DACH2Q96NX9 599 aa12.95□□□□□ -0.34
VMP1-206ENST00000587945 TSSK3Q96PN8 268 aa12.95□□□□□ -0.34
VMP1-206ENST00000587945 GATA5Q9BWX5 397 aaPredicted RBP12.95□□□□□ -0.34
VMP1-206ENST00000587945 PIGMQ9H3S5 423 aa12.95□□□□□ -0.34
VMP1-206ENST00000587945 TUBB1Q9H4B7 451 aa12.95□□□□□ -0.34
VMP1-206ENST00000587945 PLEKHF2Q9H8W4 249 aa12.95□□□□□ -0.34
VMP1-206ENST00000587945 SDHAF3Q9NRP4 125 aa12.95□□□□□ -0.34
VMP1-206ENST00000587945 C1orf109Q9NX04 203 aa12.95□□□□□ -0.34
VMP1-206ENST00000587945 FAM120CQ9NX05 1096 aaKnown RBP12.95□□□□□ -0.34
VMP1-206ENST00000587945 BAIAP2L1Q9UHR4 511 aa12.95□□□□□ -0.34
VMP1-206ENST00000587945 PACSIN3Q9UKS6 424 aa12.95□□□□□ -0.34
VMP1-206ENST00000587945 ABCG2Q9UNQ0 655 aa12.95□□□□□ -0.34
VMP1-206ENST00000587945 ARHGAP21Q5T5U3 1957 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 A0A1W2PPR1 153 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 OR2M5A3KFT3 312 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 SH3D21A4FU49 640 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 SLC22A20A6NK97 555 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 H3BML4 177 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 PDPK1O15530 556 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 RGS14O43566 566 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 ATE1O95260 518 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 HRGP04196 525 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 LINC00032P0C843 101 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 SDC1P18827 310 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 KLK2P20151 261 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 EFNA1P20827 205 aaPredicted RBP12.94□□□□□ -0.34
VMP1-206ENST00000587945 PRPH2P23942 346 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 GPC1P35052 558 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 PRKAG1P54619 331 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 DIO3P55073 304 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 CLDN20P56880 219 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 SIRPAP78324 504 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 SLC18A2Q05940 514 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 FAM27E3Q08E93 113 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 PCLAFQ15004 111 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 GRAMD1BQ3KR37 738 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 BTLAQ7Z6A9 289 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 MEIOBQ8N635 442 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 OR2W6PQ8NHA6 318 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 FBXO30Q8TB52 745 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 SMPDL3BQ92485 455 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 STARD4Q96DR4 205 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 C1GALT1C1Q96EU7 318 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 ZNF845Q96IR2 970 aaPredicted RBP12.94□□□□□ -0.34
VMP1-206ENST00000587945 FCRL1Q96LA6 429 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 ACBD3Q9H3P7 528 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 SH3BP4Q9P0V3 963 aa12.94□□□□□ -0.34
VMP1-206ENST00000587945 MRTO4Q9UKD2 239 aaKnown RBP12.94□□□□□ -0.34
VMP1-206ENST00000587945 SETD2Q9BYW2 2564 aaPredicted RBP12.94□□□□□ -0.34
VMP1-206ENST00000587945 ITPR3Q14573 2671 aa12.93□□□□□ -0.34
VMP1-206ENST00000587945 TLDC2A0PJX2 215 aa12.93□□□□□ -0.34
VMP1-206ENST00000587945 TMEM233B4DJY2 109 aa12.93□□□□□ -0.34
VMP1-206ENST00000587945 KCNH1O95259 989 aa12.93□□□□□ -0.34
VMP1-206ENST00000587945 ANGPTL1O95841 491 aa12.93□□□□□ -0.34
VMP1-206ENST00000587945 RAF1P04049 648 aa12.93□□□□□ -0.34
VMP1-206ENST00000587945 CHRNGP07510 517 aa12.93□□□□□ -0.34
VMP1-206ENST00000587945 PRPS2P11908 318 aa12.93□□□□□ -0.34
VMP1-206ENST00000587945 CLK3P49761 638 aaKnown RBP12.93□□□□□ -0.34
VMP1-206ENST00000587945 RPL38P63173 70 aaKnown RBP12.93□□□□□ -0.34
VMP1-206ENST00000587945 FOXD4Q12950 439 aaPredicted RBP12.93□□□□□ -0.34
VMP1-206ENST00000587945 KEAP1Q14145 624 aa12.93□□□□□ -0.34
VMP1-206ENST00000587945 RFTN2Q52LD8 501 aaPredicted RBP12.93□□□□□ -0.34
VMP1-206ENST00000587945 SZRD1Q7Z422 152 aa12.93□□□□□ -0.34
VMP1-206ENST00000587945 EIF1ADQ8N9N8 165 aaKnown RBP12.93□□□□□ -0.34
VMP1-206ENST00000587945 GPR151Q8TDV0 419 aa12.93□□□□□ -0.34
VMP1-206ENST00000587945 PPCDCQ96CD2 204 aa12.93□□□□□ -0.34
VMP1-206ENST00000587945 MBD6Q96DN6 1003 aa12.93□□□□□ -0.34
VMP1-206ENST00000587945 METTL2AQ96IZ6 378 aaKnown RBP12.93□□□□□ -0.34
VMP1-206ENST00000587945 PINK1Q9BXM7 581 aa12.93□□□□□ -0.34
VMP1-206ENST00000587945 TBL1XR1Q9BZK7 514 aa12.93□□□□□ -0.34
VMP1-206ENST00000587945 OPN3Q9H1Y3 402 aaPredicted RBP12.93□□□□□ -0.34
VMP1-206ENST00000587945 REEP4Q9H6H4 257 aa12.93□□□□□ -0.34
VMP1-206ENST00000587945 PTGES2Q9H7Z7 377 aa12.93□□□□□ -0.34
VMP1-206ENST00000587945 EDARQ9UNE0 448 aa12.93□□□□□ -0.34
VMP1-206ENST00000587945 NPIPB8E9PQR5 432 aa12.92□□□□□ -0.34
VMP1-206ENST00000587945 MSTNO14793 375 aa12.92□□□□□ -0.34
VMP1-206ENST00000587945 CASKO14936 926 aa12.92□□□□□ -0.34
VMP1-206ENST00000587945 TRIM13O60858 407 aa12.92□□□□□ -0.34
VMP1-206ENST00000587945 NKX2-2O95096 273 aa12.92□□□□□ -0.34
VMP1-206ENST00000587945 ACP2P11117 423 aa12.92□□□□□ -0.34
VMP1-206ENST00000587945 MAP3K8P41279 467 aa12.92□□□□□ -0.34
VMP1-206ENST00000587945 KIR2DL2P43627 348 aaPredicted RBP12.92□□□□□ -0.34
VMP1-206ENST00000587945 PSMD4P55036 377 aaKnown RBP12.92□□□□□ -0.34
VMP1-206ENST00000587945 MANFP55145 182 aaKnown RBP12.92□□□□□ -0.34
VMP1-206ENST00000587945 PPP2R2AP63151 447 aa12.92□□□□□ -0.34
VMP1-206ENST00000587945 EEF1A1P68104 462 aaKnown RBP12.92□□□□□ -0.34
VMP1-206ENST00000587945 GANABQ14697 944 aaKnown RBP12.92□□□□□ -0.34
VMP1-206ENST00000587945 DEFB113Q30KQ7 82 aa12.92□□□□□ -0.34
VMP1-206ENST00000587945 GALNTL6Q49A17 601 aa12.92□□□□□ -0.34
VMP1-206ENST00000587945 EEF1A1P5Q5VTE0 462 aa12.92□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms