RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 PSMD4P55036 377 aaKnown RBP10.49□□□□□ -0.73
LIG3-204ENST00000585740 EEF1A1P68104 462 aaKnown RBP10.49□□□□□ -0.73
LIG3-204ENST00000585740 STX4Q12846 297 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 TSPAN31Q12999 210 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 SLC13A2Q13183 592 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 SERTAD2Q14140 314 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 NR1D2Q14995 579 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 OCLNQ16625 522 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 DEFB133Q30KQ1 61 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 SLC25A30Q5SVS4 291 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 ZNF730Q6ZMV8 503 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 RASSF6Q6ZTQ3 369 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 ZER1Q7Z7L7 766 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 COMTD1Q86VU5 262 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 P2RY8Q86VZ1 359 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 CCDC103Q8IW40 242 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 GPR151Q8TDV0 419 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 ACOT11Q8WXI4 607 aaPredicted RBP10.49□□□□□ -0.73
LIG3-204ENST00000585740 SLC35B4Q969S0 331 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 AHCYL2Q96HN2 611 aaKnown RBP10.49□□□□□ -0.73
LIG3-204ENST00000585740 DGAT2Q96PD7 388 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 TGM7Q96PF1 710 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 WFDC6Q9BQY6 131 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 DCUN1D5Q9BTE7 237 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 ITPAQ9BY32 194 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 POLDIP3Q9BY77 421 aaKnown RBP10.49□□□□□ -0.73
LIG3-204ENST00000585740 NAA50Q9GZZ1 169 aaKnown RBP10.49□□□□□ -0.73
LIG3-204ENST00000585740 QRSL1Q9H0R6 528 aaKnown RBP10.49□□□□□ -0.73
LIG3-204ENST00000585740 TMEM74BQ9NUR3 256 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 IRAK4Q9NWZ3 460 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 MKLN1Q9UL63 735 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 RPL36Q9Y3U8 105 aaKnown RBP10.49□□□□□ -0.73
LIG3-204ENST00000585740 WDR87Q6ZQQ6 2873 aa10.49□□□□□ -0.73
LIG3-204ENST00000585740 DMXL1Q9Y485 3027 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 ABCA7Q8IZY2 2146 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 GON4LQ3T8J9 2241 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 A0A087WUU8 490 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 CCDC163A0A0D9SF12 145 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 A0A1W2PPW3 197 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 TRAPPC13A5PLN9 417 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 CLDN24A6NM45 220 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 CPSF4LA6NMK7 179 aaKnown RBP10.48□□□□□ -0.73
LIG3-204ENST00000585740 K7ESF4 209 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 HCRTR1O43613 425 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 NUDT21O43809 227 aaKnown RBP10.48□□□□□ -0.73
LIG3-204ENST00000585740 DUX1O43812 170 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 FCMRO60667 390 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 ZIC2O95409 532 aaPredicted RBP10.48□□□□□ -0.73
LIG3-204ENST00000585740 CBX7O95931 251 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 BCKDHBP21953 392 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 FUT4P22083 530 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 HOXA6P31267 233 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 GABRA3P34903 492 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 SOX18P35713 384 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 STT3AP46977 705 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 FNTBP49356 437 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 HSD17B7P56937 341 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 GPLD1P80108 840 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.48□□□□□ -0.73
LIG3-204ENST00000585740 IRF3Q14653 427 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 GPR68Q15743 365 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 TMEM44Q2T9K0 475 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 YOD1Q5VVQ6 348 aaPredicted RBP10.48□□□□□ -0.73
LIG3-204ENST00000585740 MAMSTRQ6ZN01 415 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 LINC00299Q6ZSB3 139 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 MED25Q71SY5 747 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 ZNF367Q7RTV3 350 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 WDR53Q7Z5U6 358 aaPredicted RBP10.48□□□□□ -0.73
LIG3-204ENST00000585740 C11orf74Q86VG3 221 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 PLXDC1Q8IUK5 500 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 RNF113BQ8IZP6 322 aaKnown RBP10.48□□□□□ -0.73
LIG3-204ENST00000585740 CLIP4Q8N3C7 705 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 CLDN22Q8N7P3 220 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 OR52R1Q8NGF1 315 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 TEX47Q8TBZ9 253 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 RIT1Q92963 219 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 MVB12AQ96EY5 273 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 SLC41A3Q96GZ6 507 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 RBM18Q96H35 190 aaKnown RBP10.48□□□□□ -0.73
LIG3-204ENST00000585740 SH3GL3Q99963 347 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 FOLH1BQ9HBA9 442 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 NLGN3Q9NZ94 848 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 TESQ9UGI8 421 aaKnown RBP10.48□□□□□ -0.73
LIG3-204ENST00000585740 SIT1Q9Y3P8 196 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 CHST2Q9Y4C5 530 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 MMACHCQ9Y4U1 282 aa10.48□□□□□ -0.73
LIG3-204ENST00000585740 KNL1Q8NG31 2342 aa10.47□□□□□ -0.73
LIG3-204ENST00000585740 NCOR2Q9Y618 2525 aa10.47□□□□□ -0.73
LIG3-204ENST00000585740 EPG5Q9HCE0 2579 aa10.47□□□□□ -0.73
LIG3-204ENST00000585740 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.47□□□□□ -0.73
LIG3-204ENST00000585740 SYNDIG1LA6NDD5 238 aa10.47□□□□□ -0.73
LIG3-204ENST00000585740 HRO43593 1189 aa10.47□□□□□ -0.73
LIG3-204ENST00000585740 BRINP1O60477 761 aa10.47□□□□□ -0.73
LIG3-204ENST00000585740 PRAMEF2O60811 474 aa10.47□□□□□ -0.73
LIG3-204ENST00000585740 BCAS1O75363 584 aaPredicted RBP10.47□□□□□ -0.73
LIG3-204ENST00000585740 TP53P04637 393 aaPredicted RBP10.47□□□□□ -0.73
LIG3-204ENST00000585740 CT62P0C5K7 136 aa10.47□□□□□ -0.73
LIG3-204ENST00000585740 TNNI3P19429 210 aa10.47□□□□□ -0.73
LIG3-204ENST00000585740 FPR3P25089 353 aa10.47□□□□□ -0.73
LIG3-204ENST00000585740 TRHRP34981 398 aaPredicted RBP10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms