RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ALPPP05187 535 aa23.16■■□□□ 1.3
SHMT1-207ENST00000580002 PABPC4LP0CB38 370 aaKnown RBP23.16■■□□□ 1.3
SHMT1-207ENST00000580002 CHRNB3Q05901 458 aa23.16■■□□□ 1.3
SHMT1-207ENST00000580002 IQCCQ4KMZ1 466 aa23.16■■□□□ 1.3
SHMT1-207ENST00000580002 PRAMEF8Q5VWM4 474 aa23.16■■□□□ 1.3
SHMT1-207ENST00000580002 PRAMEF7Q5VXH5 474 aa23.16■■□□□ 1.3
SHMT1-207ENST00000580002 PLAG1Q6DJT9 500 aa23.16■■□□□ 1.3
SHMT1-207ENST00000580002 GOLM1Q8NBJ4 401 aa23.16■■□□□ 1.3
SHMT1-207ENST00000580002 OR4C3Q8NH37 302 aa23.16■■□□□ 1.3
SHMT1-207ENST00000580002 OR52P1PQ8NH57 321 aa23.16■■□□□ 1.3
SHMT1-207ENST00000580002 UGT2B28Q9BY64 529 aa23.16■■□□□ 1.3
SHMT1-207ENST00000580002 SEMA6AQ9H2E6 1030 aa23.16■■□□□ 1.3
SHMT1-207ENST00000580002 ARMC1Q9NVT9 282 aa23.16■■□□□ 1.3
SHMT1-207ENST00000580002 CALML5Q9NZT1 146 aa23.16■■□□□ 1.3
SHMT1-207ENST00000580002 KCND3Q9UK17 655 aa23.16■■□□□ 1.3
SHMT1-207ENST00000580002 KIAA0513O60268 411 aa23.15■■□□□ 1.3
SHMT1-207ENST00000580002 FESP07332 822 aa23.15■■□□□ 1.3
SHMT1-207ENST00000580002 ITGAMP11215 1152 aa23.15■■□□□ 1.3
SHMT1-207ENST00000580002 FLYWCH1Q4VC44 716 aa23.15■■□□□ 1.3
SHMT1-207ENST00000580002 FAM98BQ52LJ0 330 aaKnown RBP23.15■■□□□ 1.3
SHMT1-207ENST00000580002 ZNF311Q5JNZ3 666 aa23.15■■□□□ 1.3
SHMT1-207ENST00000580002 ZFP1Q6P2D0 407 aa23.15■■□□□ 1.3
SHMT1-207ENST00000580002 SPPL2AQ8TCT8 520 aa23.15■■□□□ 1.3
SHMT1-207ENST00000580002 C7orf34Q96L11 122 aa23.15■■□□□ 1.3
SHMT1-207ENST00000580002 ADOQ96SZ5 270 aa23.15■■□□□ 1.3
SHMT1-207ENST00000580002 STX18Q9P2W9 335 aaKnown RBP23.15■■□□□ 1.3
SHMT1-207ENST00000580002 ZNF451Q9Y4E5 1061 aa23.15■■□□□ 1.3
SHMT1-207ENST00000580002 AGAP5A6NIR3 686 aa23.14■■□□□ 1.3
SHMT1-207ENST00000580002 FRS3O43559 492 aa23.14■■□□□ 1.3
SHMT1-207ENST00000580002 PDE9AO76083 593 aa23.14■■□□□ 1.3
SHMT1-207ENST00000580002 NADKO95544 446 aaPredicted RBP23.14■■□□□ 1.3
SHMT1-207ENST00000580002 RAP2AP10114 183 aa23.14■■□□□ 1.3
SHMT1-207ENST00000580002 FUT4P22083 530 aa23.14■■□□□ 1.3
SHMT1-207ENST00000580002 ABCD3P28288 659 aa23.14■■□□□ 1.3
SHMT1-207ENST00000580002 YAP1P46937 504 aaKnown RBP23.14■■□□□ 1.3
SHMT1-207ENST00000580002 KRT73Q86Y46 540 aa23.14■■□□□ 1.3
SHMT1-207ENST00000580002 APOBEC4Q8WW27 367 aaKnown RBP23.14■■□□□ 1.3
SHMT1-207ENST00000580002 DEFB126Q9BYW3 111 aa23.14■■□□□ 1.3
SHMT1-207ENST00000580002 ABCG2Q9UNQ0 655 aa23.14■■□□□ 1.3
SHMT1-207ENST00000580002 REM1O75628 298 aa23.14■■□□□ 1.29
SHMT1-207ENST00000580002 SERPINB7O75635 380 aa23.14■■□□□ 1.29
SHMT1-207ENST00000580002 ZFAND5O76080 213 aa23.14■■□□□ 1.29
SHMT1-207ENST00000580002 AK1P00568 194 aa23.14■■□□□ 1.29
SHMT1-207ENST00000580002 DCAF7P61962 342 aa23.14■■□□□ 1.29
SHMT1-207ENST00000580002 PLAURQ03405 335 aa23.14■■□□□ 1.29
SHMT1-207ENST00000580002 PDZK1Q5T2W1 519 aa23.14■■□□□ 1.29
SHMT1-207ENST00000580002 M1APQ8TC57 530 aa23.14■■□□□ 1.29
SHMT1-207ENST00000580002 NRG4Q8WWG1 115 aa23.14■■□□□ 1.29
SHMT1-207ENST00000580002 OMA1Q96E52 524 aa23.14■■□□□ 1.29
SHMT1-207ENST00000580002 PRR14Q9BWN1 585 aa23.14■■□□□ 1.29
SHMT1-207ENST00000580002 NINQ8N4C6 2090 aa23.14■■□□□ 1.29
SHMT1-207ENST00000580002 TTC36A6NLP5 189 aa23.13■■□□□ 1.29
SHMT1-207ENST00000580002 M0R3H8 397 aa23.13■■□□□ 1.29
SHMT1-207ENST00000580002 TO15178 435 aa23.13■■□□□ 1.29
SHMT1-207ENST00000580002 IL33O95760 270 aa23.13■■□□□ 1.29
SHMT1-207ENST00000580002 IFNA14P01570 189 aa23.13■■□□□ 1.29
SHMT1-207ENST00000580002 ATP6V1C1P21283 382 aa23.13■■□□□ 1.29
SHMT1-207ENST00000580002 RPS4Y1P22090 263 aaKnown RBP23.13■■□□□ 1.29
SHMT1-207ENST00000580002 PPP1R8Q12972 351 aaKnown RBP23.13■■□□□ 1.29
SHMT1-207ENST00000580002 CLN3Q13286 438 aa23.13■■□□□ 1.29
SHMT1-207ENST00000580002 DECR1Q16698 335 aa23.13■■□□□ 1.29
SHMT1-207ENST00000580002 TBC1D25Q3MII6 688 aa23.13■■□□□ 1.29
SHMT1-207ENST00000580002 ZNF836Q6ZNA1 936 aa23.13■■□□□ 1.29
SHMT1-207ENST00000580002 ZDHHC21Q8IVQ6 265 aa23.13■■□□□ 1.29
SHMT1-207ENST00000580002 TMEM102Q8N9M5 508 aaPredicted RBP23.13■■□□□ 1.29
SHMT1-207ENST00000580002 VANGL1Q8TAA9 524 aaPredicted RBP23.13■■□□□ 1.29
SHMT1-207ENST00000580002 NUBPLQ8TB37 319 aa23.13■■□□□ 1.29
SHMT1-207ENST00000580002 ZBTB20Q9HC78 741 aaPredicted RBP23.13■■□□□ 1.29
SHMT1-207ENST00000580002 MMP25Q9NPA2 562 aa23.13■■□□□ 1.29
SHMT1-207ENST00000580002 RIMS3Q9UJD0 308 aa23.13■■□□□ 1.29
SHMT1-207ENST00000580002 ZNF443Q9Y2A4 671 aaPredicted RBP23.13■■□□□ 1.29
SHMT1-207ENST00000580002 NPIPB9F8W1W9 429 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 J3KTA2 159 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 NKX2-8O15522 239 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 TSPAN2O60636 221 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 OR2J2O76002 312 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 EXT1Q16394 746 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 AP1ARQ63HQ0 302 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 APOOLQ6UXV4 268 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 PQLC1Q8N2U9 271 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 ZNF614Q8N883 585 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 RTN4RQ9BZR6 473 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 AMBRA1Q9C0C7 1298 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 MYOTQ9UBF9 498 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 C17orf51A8MQB3 221 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 PCDH17O14917 1159 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 SEMA7AO75326 666 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 HPP00738 406 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 CYP4B1P13584 511 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 IL7RP16871 459 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 DCTP40126 519 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 HOXC5Q00444 222 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 PLCXD2Q0VAA5 305 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 ELOAQ14241 798 aaKnown RBP23.12■■□□□ 1.29
SHMT1-207ENST00000580002 CPEB4Q17RY0 729 aaKnown RBP eCLIP23.12■■□□□ 1.29
SHMT1-207ENST00000580002 GRAMD1BQ3KR37 738 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 IFI44LQ53G44 452 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 PEX5LQ8IYB4 626 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 OR5M3Q8NGP4 307 aa23.12■■□□□ 1.29
SHMT1-207ENST00000580002 OR8K3Q8NH51 312 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms