RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-213ENST00000573166 NPIPA5E9PKD4 350 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 C11orf98E9PRG8 122 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 AKAP8O43823 692 aaKnown RBP9.43□□□□□ -0.9
SMG6-213ENST00000573166 PEPDP12955 493 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 NR4A1P22736 598 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 KCNJ5P48544 419 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 SLC9A3P48764 834 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 ST13P50502 369 aaKnown RBP9.43□□□□□ -0.9
SMG6-213ENST00000573166 SSR4P51571 173 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 KCNJ10P78508 379 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 HOXC5Q00444 222 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 PMS2P3Q13401 168 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 PIN1Q13526 163 aaPredicted RBP9.43□□□□□ -0.9
SMG6-213ENST00000573166 SLC23A3Q6PIS1 610 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 B3GNT6Q6ZMB0 384 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 NLGN4YQ8NFZ3 816 aaPredicted RBP9.43□□□□□ -0.9
SMG6-213ENST00000573166 TSPAN14Q8NG11 270 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 SLC38A5Q8WUX1 472 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 NEURL3Q96EH8 262 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 SFXN2Q96NB2 322 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 PIGUQ9H490 435 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 TMEM185BQ9H7F4 350 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 SMURF2Q9HAU4 748 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 ZNF160Q9HCG1 818 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 AMBNQ9NP70 447 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 STMN3Q9NZ72 180 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 TMEM9Q9P0T7 183 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 NPIPA1Q9UND3 350 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 CACNA1GO43497 2377 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 TOX3O15405 576 aaPredicted RBP9.43□□□□□ -0.9
SMG6-213ENST00000573166 HCRTR1O43613 425 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 SYNGR4O95473 234 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 BCL10O95999 233 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 DCTP40126 519 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 ATP1A4Q13733 1029 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 EXT1Q16394 746 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 ZNF385BQ569K4 471 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 FCRLBQ6BAA4 426 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 MFSD12Q6NUT3 480 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 SIRT6Q8N6T7 355 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 MOSPD2Q8NHP6 518 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 RFKQ969G6 155 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 ZNF559Q9BR84 538 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 UTP23Q9BRU9 249 aaKnown RBP9.43□□□□□ -0.9
SMG6-213ENST00000573166 ITPAQ9BY32 194 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 COMMD3-BMI1R4GMX3 469 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 FRMPD3Q5JV73 1810 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 DOCK4Q8N1I0 1966 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 TRAPPC13A5PLN9 417 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 ADORA3P0DMS8 318 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 ZNF823P16415 610 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 ZNF24P17028 368 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 PWWP2BQ6NUJ5 590 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 ZZZ3Q8IYH5 903 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 QRSL1Q9H0R6 528 aaKnown RBP9.43□□□□□ -0.9
SMG6-213ENST00000573166 ANKRD10Q9NXR5 420 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 MGAT4BQ9UQ53 548 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 SLC35A3Q9Y2D2 325 aa9.43□□□□□ -0.9
SMG6-213ENST00000573166 LNP1A1A4G5 178 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 G3V3Y1 287 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 RNF13O43567 381 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 ABCB7O75027 752 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 PPM1BO75688 479 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 CD46P15529 392 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 ACVR2AP27037 513 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 SFTPDP35247 375 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 CAPGP40121 348 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 OR2B6P58173 313 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 DNASE1L3Q13609 305 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 EXOC3L2Q2M3D2 409 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 COX20Q5RI15 118 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 SLC35F1Q5T1Q4 408 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 ZNF793Q6ZN11 406 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 MED25Q71SY5 747 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 CPEB2Q7Z5Q1 589 aaKnown RBP9.42□□□□□ -0.9
SMG6-213ENST00000573166 VRK2Q86Y07 508 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 UBE2J2Q8N2K1 259 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 COQ8BQ96D53 544 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 DGCR14Q96DF8 476 aaKnown RBP9.42□□□□□ -0.9
SMG6-213ENST00000573166 WDR34Q96EX3 536 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 THOC3Q96J01 351 aaKnown RBP9.42□□□□□ -0.9
SMG6-213ENST00000573166 UCK1Q9HA47 277 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 TMEM165Q9HC07 324 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 NANSQ9NR45 359 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 TOR4AQ9NXH8 423 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 MRPS2Q9Y399 296 aaKnown RBP9.42□□□□□ -0.9
SMG6-213ENST00000573166 PCDHGB5Q9Y5G0 923 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 SLCO1B1Q9Y6L6 691 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 PLXNA4Q9HCM2 1894 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 ARGFXA6NJG6 315 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 H3BML4 177 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 MPZL2O60487 215 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 CKMT1AP12532 417 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 HOXA6P31267 233 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 TTKP33981 857 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 SRYQ05066 204 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 KHDRBS1Q07666 443 aaKnown RBP eCLIP9.42□□□□□ -0.9
SMG6-213ENST00000573166 MED22Q15528 200 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 ZCCHC12Q6PEW1 402 aa9.42□□□□□ -0.9
SMG6-213ENST00000573166 OR7G1Q8NGA0 311 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms