RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 Q6ZSR9 355 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 FAM9CQ8IZT9 166 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 CLYBLQ8N0X4 340 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 RPRMLQ8N4K4 120 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 TCP10LQ8TDR4 215 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 HGDQ93099 445 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 CAVIN3Q969G5 261 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 NTNG2Q96CW9 530 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 TMCO6Q96DC7 493 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 TMEM41AQ96HV5 264 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 EGLN2Q96KS0 407 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 NODALQ96S42 347 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 TTYH2Q9BSA4 534 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 PARD6BQ9BYG5 372 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 PRDM14Q9GZV8 571 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 STMN4Q9H169 189 aaPredicted RBP6.79□□□□□ -1.32
NUP88-205ENST00000572809 SLC6A15Q9H2J7 730 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 METTL7AQ9H8H3 244 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 LRTM1Q9HBL6 345 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 EML4Q9HC35 981 aaKnown RBP6.79□□□□□ -1.32
NUP88-205ENST00000572809 MYNNQ9NPC7 610 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 KCNJ16Q9NPI9 418 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 C1orf109Q9NX04 203 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 SENP1Q9P0U3 644 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 SLC17A7Q9P2U7 560 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 SPRR3Q9UBC9 169 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.79□□□□□ -1.32
NUP88-205ENST00000572809 LGALS13Q9UHV8 139 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 EXO1Q9UQ84 846 aaKnown RBP6.79□□□□□ -1.32
NUP88-205ENST00000572809 RNF6Q9Y252 685 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 SF3B6Q9Y3B4 125 aaKnown RBP6.79□□□□□ -1.32
NUP88-205ENST00000572809 EMC9Q9Y3B6 208 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 TRAF6Q9Y4K3 522 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 PCDHGB3Q9Y5G1 929 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 DNAJC15Q9Y5T4 150 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 V9GYY5 206 aaPredicted RBP6.79□□□□□ -1.32
NUP88-205ENST00000572809 NCOA6Q14686 2063 aaPredicted RBP6.79□□□□□ -1.32
NUP88-205ENST00000572809 PCNX1Q96RV3 2341 aa6.79□□□□□ -1.32
NUP88-205ENST00000572809 ZNF407Q9C0G0 2248 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 A0A087WV62 115 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 C15orf38-AP3S2A0A0A6YYH1 394 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 OR6C70A6NIJ9 312 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 AHRRA9YTQ3 701 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 PLOD2O00469 737 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 UGT2B11O75310 529 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 CBR3O75828 277 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 CHRNGP07510 517 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 GLI4P10075 376 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 ENDOUP21128 410 aaKnown RBP6.78□□□□□ -1.32
NUP88-205ENST00000572809 TACR1P25103 407 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 ELAVL4P26378 380 aaKnown RBP6.78□□□□□ -1.32
NUP88-205ENST00000572809 PTPN6P29350 595 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 HOXC12P31275 282 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 PTGER4P35408 488 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 KRT20P35900 424 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 PTGDSP41222 190 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 ZFP36L2P47974 494 aaKnown RBP6.78□□□□□ -1.32
NUP88-205ENST00000572809 CDK9P50750 372 aaKnown RBP6.78□□□□□ -1.32
NUP88-205ENST00000572809 PNLIPRP2P54317 469 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 CORO7P57737 925 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 PSPHP78330 225 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 UGT3A2Q3SY77 523 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 RFTN2Q52LD8 501 aaPredicted RBP6.78□□□□□ -1.32
NUP88-205ENST00000572809 ARL13AQ5H913 290 aaPredicted RBP6.78□□□□□ -1.32
NUP88-205ENST00000572809 FAM209AQ5JX71 171 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 C1orf185Q5T7R7 199 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 KANK2Q63ZY3 851 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 ANGPTL8Q6UXH0 198 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 RNF165Q6ZSG1 346 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 IKBIPQ70UQ0 350 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 CCDC71Q8IV32 467 aaPredicted RBP6.78□□□□□ -1.32
NUP88-205ENST00000572809 SLC44A2Q8IWA5 706 aaPredicted RBP6.78□□□□□ -1.32
NUP88-205ENST00000572809 OR7G2Q8NG99 324 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 OR2T11Q8NH01 316 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 KISS1RQ969F8 398 aaPredicted RBP6.78□□□□□ -1.32
NUP88-205ENST00000572809 GFM2Q969S9 779 aaKnown RBP6.78□□□□□ -1.32
NUP88-205ENST00000572809 TMBIM1Q969X1 311 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 VSTM2LQ96N03 204 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 COL21A1Q96P44 957 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 BTBD9Q96Q07 612 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 ADOQ96SZ5 270 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 TIMP4Q99727 224 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 MECRQ9BV79 373 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 TMEM109Q9BVC6 243 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 OSBPL11Q9BXB4 747 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 UCK2Q9BZX2 261 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 ENKD1Q9H0I2 346 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 UBQLN3Q9H347 655 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 TUBB1Q9H4B7 451 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 GLIPR2Q9H4G4 154 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 FOLH1BQ9HBA9 442 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 KLRF1Q9NZS2 232 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 C19orf53Q9UNZ5 99 aaPredicted RBP6.78□□□□□ -1.32
NUP88-205ENST00000572809 C15orf41Q9Y2V0 281 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 SLC6A5Q9Y345 797 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 FAM215AQ9Y5M1 114 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 PTGDR2Q9Y5Y4 395 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 CENPEQ02224 2701 aa6.78□□□□□ -1.32
NUP88-205ENST00000572809 DNAJC13O75165 2243 aa6.77□□□□□ -1.33
NUP88-205ENST00000572809 A0A0G2JNJ9 132 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms